Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04545 and LU632_RS04550 are separated by 120 nucleotides LU632_RS04550 and LU632_RS04555 are separated by 169 nucleotides LU632_RS04555 and LU632_RS04560 are separated by 104 nucleotides
LU632_RS04545: LU632_RS04545 - hypothetical protein, at 891,176 to 892,093
_RS04545
LU632_RS04550: LU632_RS04550 - DUF2913 family protein, at 892,214 to 892,813
_RS04550
LU632_RS04555: LU632_RS04555 - IS481 family transposase, at 892,983 to 894,023
_RS04555
LU632_RS04560: LU632_RS04560 - Rpn family recombination-promoting nuclease/putative transposase, at 894,128 to 895,066
_RS04560
Position (kb) 892
893
894
895 Strain fitness (log2 ratio) -2
-1
0
1 at 892.018 kb on + strand at 892.018 kb on + strand at 892.153 kb on - strand at 892.194 kb on + strand at 892.194 kb on + strand at 892.194 kb on + strand at 892.195 kb on - strand at 892.195 kb on - strand at 892.195 kb on - strand at 892.195 kb on - strand at 892.195 kb on - strand at 892.196 kb on + strand at 892.207 kb on - strand at 892.511 kb on + strand, within LU632_RS04550 at 892.511 kb on + strand, within LU632_RS04550 at 892.583 kb on + strand, within LU632_RS04550 at 892.619 kb on + strand, within LU632_RS04550 at 892.620 kb on - strand, within LU632_RS04550 at 892.658 kb on + strand, within LU632_RS04550 at 892.672 kb on - strand, within LU632_RS04550 at 892.716 kb on + strand, within LU632_RS04550 at 892.783 kb on + strand at 892.784 kb on - strand at 892.819 kb on - strand at 892.819 kb on - strand at 892.822 kb on + strand at 892.822 kb on + strand at 892.823 kb on - strand at 892.825 kb on - strand at 892.830 kb on - strand at 892.834 kb on - strand at 892.895 kb on + strand at 892.896 kb on - strand at 892.897 kb on + strand at 892.897 kb on + strand at 892.898 kb on - strand at 892.898 kb on - strand at 892.913 kb on - strand at 894.497 kb on - strand, within LU632_RS04560 at 894.587 kb on - strand, within LU632_RS04560 at 894.594 kb on + strand, within LU632_RS04560 at 894.595 kb on - strand, within LU632_RS04560 at 894.675 kb on + strand, within LU632_RS04560 at 894.676 kb on - strand, within LU632_RS04560 at 894.676 kb on - strand, within LU632_RS04560 at 894.690 kb on - strand, within LU632_RS04560 at 894.692 kb on + strand, within LU632_RS04560 at 894.807 kb on - strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.815 kb on - strand, within LU632_RS04560 at 894.815 kb on - strand, within LU632_RS04560 at 894.816 kb on + strand, within LU632_RS04560 at 894.816 kb on + strand, within LU632_RS04560 at 894.816 kb on + strand, within LU632_RS04560 at 894.850 kb on - strand, within LU632_RS04560
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 892,018 + -0.2 892,018 + -0.3 892,153 - +0.6 892,194 + -0.3 892,194 + -0.7 892,194 + -0.8 892,195 - +0.3 892,195 - +0.2 892,195 - +0.6 892,195 - -0.2 892,195 - +0.1 892,196 + +0.4 892,207 - +0.1 892,511 + LU632_RS04550 0.49 +1.4 892,511 + LU632_RS04550 0.49 -0.6 892,583 + LU632_RS04550 0.61 +1.6 892,619 + LU632_RS04550 0.68 +1.0 892,620 - LU632_RS04550 0.68 +0.6 892,658 + LU632_RS04550 0.74 +0.7 892,672 - LU632_RS04550 0.76 +0.1 892,716 + LU632_RS04550 0.84 -0.1 892,783 + -0.2 892,784 - -0.3 892,819 - +0.0 892,819 - +1.5 892,822 + +0.0 892,822 + +0.2 892,823 - -0.1 892,825 - -1.8 892,830 - -0.5 892,834 - -0.5 892,895 + -0.0 892,896 - +0.3 892,897 + -0.4 892,897 + +1.4 892,898 - +0.9 892,898 - +0.4 892,913 - +0.6 894,497 - LU632_RS04560 0.39 +0.2 894,587 - LU632_RS04560 0.49 +0.4 894,594 + LU632_RS04560 0.50 +0.5 894,595 - LU632_RS04560 0.50 +0.4 894,675 + LU632_RS04560 0.58 -0.7 894,676 - LU632_RS04560 0.58 -0.2 894,676 - LU632_RS04560 0.58 -0.0 894,690 - LU632_RS04560 0.60 +0.1 894,692 + LU632_RS04560 0.60 -0.5 894,807 - LU632_RS04560 0.72 -0.3 894,814 + LU632_RS04560 0.73 +0.6 894,814 + LU632_RS04560 0.73 -0.3 894,814 + LU632_RS04560 0.73 +0.8 894,814 + LU632_RS04560 0.73 -0.1 894,814 + LU632_RS04560 0.73 +0.1 894,815 - LU632_RS04560 0.73 +1.1 894,815 - LU632_RS04560 0.73 +0.3 894,816 + LU632_RS04560 0.73 -0.1 894,816 + LU632_RS04560 0.73 +0.5 894,816 + LU632_RS04560 0.73 +0.4 894,850 - LU632_RS04560 0.77 +0.4
Or see this region's nucleotide sequence