Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04165 and LU632_RS04170 are separated by 498 nucleotides LU632_RS04170 and katB are separated by 61 nucleotides
LU632_RS04165: LU632_RS04165 - 2-isopropylmalate synthase, at 826,861 to 827,376
_RS04165
LU632_RS04170: LU632_RS04170 - ankyrin repeat domain-containing protein, at 827,875 to 828,414
_RS04170
LU632_RS04175: katB - catalase, at 828,476 to 829,942
katB
Position (kb) 827
828
829 Strain fitness (log2 ratio) -1
0
1
2 at 826.888 kb on - strand at 826.888 kb on - strand at 826.999 kb on - strand, within LU632_RS04165 at 827.054 kb on + strand, within LU632_RS04165 at 827.058 kb on + strand, within LU632_RS04165 at 827.097 kb on + strand, within LU632_RS04165 at 827.236 kb on + strand, within LU632_RS04165 at 827.236 kb on + strand, within LU632_RS04165 at 827.256 kb on + strand, within LU632_RS04165 at 827.256 kb on + strand, within LU632_RS04165 at 827.257 kb on - strand, within LU632_RS04165 at 827.335 kb on - strand at 827.336 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.339 kb on - strand at 827.404 kb on + strand at 827.426 kb on + strand at 827.426 kb on + strand at 827.431 kb on + strand at 827.432 kb on - strand at 827.466 kb on + strand at 827.503 kb on - strand at 827.541 kb on + strand at 827.556 kb on + strand at 827.557 kb on - strand at 827.557 kb on - strand at 827.557 kb on - strand at 827.558 kb on + strand at 827.559 kb on - strand at 827.574 kb on + strand at 827.575 kb on - strand at 827.610 kb on - strand at 827.610 kb on - strand at 827.637 kb on + strand at 827.638 kb on - strand at 827.698 kb on + strand at 827.699 kb on - strand at 827.709 kb on - strand at 827.709 kb on - strand at 827.826 kb on + strand at 827.827 kb on - strand at 827.827 kb on - strand at 827.829 kb on + strand at 827.829 kb on + strand at 827.829 kb on + strand at 827.830 kb on - strand at 827.830 kb on - strand at 827.834 kb on - strand at 827.834 kb on - strand at 827.845 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.848 kb on - strand at 827.916 kb on + strand at 827.916 kb on + strand at 827.916 kb on + strand at 827.917 kb on - strand at 827.917 kb on - strand at 827.920 kb on - strand at 827.920 kb on - strand at 828.002 kb on + strand, within LU632_RS04170 at 828.002 kb on + strand, within LU632_RS04170 at 828.002 kb on + strand, within LU632_RS04170 at 828.003 kb on - strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.246 kb on - strand, within LU632_RS04170 at 828.309 kb on - strand, within LU632_RS04170 at 828.309 kb on - strand, within LU632_RS04170 at 828.312 kb on + strand, within LU632_RS04170 at 828.313 kb on - strand, within LU632_RS04170 at 828.389 kb on + strand at 828.390 kb on - strand at 828.467 kb on - strand at 828.472 kb on + strand at 828.472 kb on + strand at 828.472 kb on + strand at 828.473 kb on - strand at 828.473 kb on - strand at 828.570 kb on + strand at 828.635 kb on - strand, within katB at 828.667 kb on - strand, within katB at 828.675 kb on + strand, within katB at 828.718 kb on + strand, within katB at 828.718 kb on + strand, within katB at 828.719 kb on - strand, within katB at 828.719 kb on - strand, within katB at 828.719 kb on - strand, within katB at 828.805 kb on - strand, within katB at 828.886 kb on - strand, within katB at 828.931 kb on + strand, within katB at 828.968 kb on - strand, within katB at 828.968 kb on - strand, within katB at 829.079 kb on - strand, within katB at 829.167 kb on + strand, within katB at 829.167 kb on + strand, within katB at 829.167 kb on + strand, within katB at 829.233 kb on + strand, within katB at 829.234 kb on - strand, within katB at 829.234 kb on - strand, within katB at 829.314 kb on + strand, within katB at 829.348 kb on - strand, within katB at 829.361 kb on - strand, within katB at 829.364 kb on - strand, within katB at 829.393 kb on + strand, within katB at 829.393 kb on + strand, within katB
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 826,888 - -0.5 826,888 - -0.3 826,999 - LU632_RS04165 0.27 +0.6 827,054 + LU632_RS04165 0.37 -0.7 827,058 + LU632_RS04165 0.38 +1.8 827,097 + LU632_RS04165 0.46 -0.5 827,236 + LU632_RS04165 0.73 -0.2 827,236 + LU632_RS04165 0.73 +0.3 827,256 + LU632_RS04165 0.77 +0.2 827,256 + LU632_RS04165 0.77 -0.3 827,257 - LU632_RS04165 0.77 +0.2 827,335 - +0.8 827,336 + +0.3 827,338 + +0.0 827,338 + +0.6 827,338 + -0.8 827,338 + -0.1 827,339 - +1.0 827,404 + -0.4 827,426 + +0.1 827,426 + -0.3 827,431 + -0.3 827,432 - -0.3 827,466 + -0.2 827,503 - +0.8 827,541 + -0.1 827,556 + -1.0 827,557 - -0.8 827,557 - -0.1 827,557 - -0.1 827,558 + -0.0 827,559 - -0.8 827,574 + +0.1 827,575 - +0.0 827,610 - +0.1 827,610 - -0.9 827,637 + +0.1 827,638 - -0.2 827,698 + -0.2 827,699 - -1.0 827,709 - +0.3 827,709 - -0.3 827,826 + -0.7 827,827 - -0.3 827,827 - -0.4 827,829 + +0.8 827,829 + -0.2 827,829 + +0.2 827,830 - +0.8 827,830 - -0.1 827,834 - -0.1 827,834 - -0.5 827,845 + -0.2 827,847 + -0.6 827,847 + +0.8 827,847 + -0.4 827,847 + -0.8 827,848 - -0.2 827,916 + +1.1 827,916 + +0.1 827,916 + +0.2 827,917 - +0.5 827,917 - -0.1 827,920 - -1.5 827,920 - +1.1 828,002 + LU632_RS04170 0.24 +0.3 828,002 + LU632_RS04170 0.24 -0.2 828,002 + LU632_RS04170 0.24 +0.6 828,003 - LU632_RS04170 0.24 +1.0 828,245 + LU632_RS04170 0.69 -0.9 828,245 + LU632_RS04170 0.69 +2.0 828,245 + LU632_RS04170 0.69 -0.3 828,246 - LU632_RS04170 0.69 -0.1 828,309 - LU632_RS04170 0.80 -0.7 828,309 - LU632_RS04170 0.80 -0.0 828,312 + LU632_RS04170 0.81 -0.2 828,313 - LU632_RS04170 0.81 +0.2 828,389 + -1.0 828,390 - -0.3 828,467 - -0.6 828,472 + -0.3 828,472 + +0.3 828,472 + -0.3 828,473 - -0.6 828,473 - -0.1 828,570 + +1.3 828,635 - katB LU632_RS04175 0.11 +0.8 828,667 - katB LU632_RS04175 0.13 -0.7 828,675 + katB LU632_RS04175 0.14 -0.4 828,718 + katB LU632_RS04175 0.16 -0.0 828,718 + katB LU632_RS04175 0.16 -0.4 828,719 - katB LU632_RS04175 0.17 -0.8 828,719 - katB LU632_RS04175 0.17 -0.0 828,719 - katB LU632_RS04175 0.17 -0.8 828,805 - katB LU632_RS04175 0.22 +0.8 828,886 - katB LU632_RS04175 0.28 +0.4 828,931 + katB LU632_RS04175 0.31 +0.1 828,968 - katB LU632_RS04175 0.34 +0.3 828,968 - katB LU632_RS04175 0.34 -0.1 829,079 - katB LU632_RS04175 0.41 +1.2 829,167 + katB LU632_RS04175 0.47 +0.0 829,167 + katB LU632_RS04175 0.47 +0.2 829,167 + katB LU632_RS04175 0.47 -0.4 829,233 + katB LU632_RS04175 0.52 -0.4 829,234 - katB LU632_RS04175 0.52 -1.5 829,234 - katB LU632_RS04175 0.52 +1.1 829,314 + katB LU632_RS04175 0.57 -0.5 829,348 - katB LU632_RS04175 0.59 -0.7 829,361 - katB LU632_RS04175 0.60 -0.3 829,364 - katB LU632_RS04175 0.61 +0.3 829,393 + katB LU632_RS04175 0.63 +0.3 829,393 + katB LU632_RS04175 0.63 +1.6
Or see this region's nucleotide sequence