Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04110

Experiment: CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04105 and LU632_RS04110 are separated by 123 nucleotidesLU632_RS04110 and LU632_RS04115 are separated by 37 nucleotidesLU632_RS04115 and radC are separated by 11 nucleotides LU632_RS04105: LU632_RS04105 - hypothetical protein, at 816,722 to 817,663 _RS04105 LU632_RS04110: LU632_RS04110 - DUF945 domain-containing protein, at 817,787 to 818,608 _RS04110 LU632_RS04115: LU632_RS04115 - antirestriction protein, at 818,646 to 819,125 _RS04115 LU632_RS04120: radC - DNA repair protein RadC, at 819,137 to 819,616 radC Position (kb) 817 818 819Strain fitness (log2 ratio) -2 -1 0 1 2 3at 816.856 kb on + strand, within LU632_RS04105at 816.857 kb on - strand, within LU632_RS04105at 816.900 kb on - strand, within LU632_RS04105at 817.082 kb on + strand, within LU632_RS04105at 817.098 kb on - strand, within LU632_RS04105at 817.098 kb on - strand, within LU632_RS04105at 817.098 kb on - strand, within LU632_RS04105at 817.133 kb on + strand, within LU632_RS04105at 817.203 kb on + strand, within LU632_RS04105at 817.203 kb on + strand, within LU632_RS04105at 817.203 kb on + strand, within LU632_RS04105at 817.203 kb on + strand, within LU632_RS04105at 817.203 kb on + strand, within LU632_RS04105at 817.204 kb on - strand, within LU632_RS04105at 817.204 kb on - strand, within LU632_RS04105at 817.373 kb on + strand, within LU632_RS04105at 817.373 kb on + strand, within LU632_RS04105at 817.374 kb on - strand, within LU632_RS04105at 817.374 kb on - strand, within LU632_RS04105at 817.393 kb on + strand, within LU632_RS04105at 817.405 kb on + strand, within LU632_RS04105at 817.405 kb on + strand, within LU632_RS04105at 817.406 kb on - strand, within LU632_RS04105at 817.406 kb on - strand, within LU632_RS04105at 817.406 kb on - strand, within LU632_RS04105at 817.463 kb on + strand, within LU632_RS04105at 817.527 kb on - strand, within LU632_RS04105at 817.553 kb on - strand, within LU632_RS04105at 817.553 kb on - strand, within LU632_RS04105at 817.564 kb on - strand, within LU632_RS04105at 817.634 kb on - strandat 817.639 kb on - strandat 817.712 kb on + strandat 817.712 kb on + strandat 817.718 kb on + strandat 817.782 kb on + strandat 817.783 kb on - strandat 817.783 kb on - strandat 817.936 kb on + strand, within LU632_RS04110at 817.936 kb on + strand, within LU632_RS04110at 818.127 kb on + strand, within LU632_RS04110at 818.128 kb on - strand, within LU632_RS04110at 818.243 kb on + strand, within LU632_RS04110at 818.244 kb on - strand, within LU632_RS04110at 818.308 kb on - strand, within LU632_RS04110at 818.506 kb on + strand, within LU632_RS04110at 818.535 kb on + strandat 818.535 kb on + strandat 818.536 kb on - strandat 818.536 kb on - strandat 818.536 kb on - strandat 818.536 kb on - strandat 818.585 kb on - strandat 818.585 kb on - strandat 818.602 kb on + strandat 818.625 kb on - strandat 818.716 kb on + strand, within LU632_RS04115at 818.807 kb on + strand, within LU632_RS04115at 818.921 kb on + strand, within LU632_RS04115at 818.922 kb on - strand, within LU632_RS04115at 818.922 kb on - strand, within LU632_RS04115at 818.922 kb on - strand, within LU632_RS04115at 818.926 kb on + strand, within LU632_RS04115at 819.007 kb on + strand, within LU632_RS04115at 819.007 kb on + strand, within LU632_RS04115at 819.057 kb on + strand, within LU632_RS04115at 819.057 kb on + strand, within LU632_RS04115at 819.057 kb on + strand, within LU632_RS04115at 819.156 kb on + strandat 819.171 kb on + strandat 819.228 kb on + strand, within radCat 819.229 kb on - strand, within radCat 819.352 kb on + strand, within radCat 819.353 kb on - strand, within radC

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Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
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816,856 + LU632_RS04105 0.14 -0.8
816,857 - LU632_RS04105 0.14 -0.4
816,900 - LU632_RS04105 0.19 -0.3
817,082 + LU632_RS04105 0.38 -0.2
817,098 - LU632_RS04105 0.40 -0.1
817,098 - LU632_RS04105 0.40 -0.2
817,098 - LU632_RS04105 0.40 +0.8
817,133 + LU632_RS04105 0.44 +0.7
817,203 + LU632_RS04105 0.51 +1.2
817,203 + LU632_RS04105 0.51 +0.8
817,203 + LU632_RS04105 0.51 -0.3
817,203 + LU632_RS04105 0.51 -0.2
817,203 + LU632_RS04105 0.51 -0.3
817,204 - LU632_RS04105 0.51 +0.5
817,204 - LU632_RS04105 0.51 -0.1
817,373 + LU632_RS04105 0.69 -1.2
817,373 + LU632_RS04105 0.69 +0.0
817,374 - LU632_RS04105 0.69 -0.4
817,374 - LU632_RS04105 0.69 -0.1
817,393 + LU632_RS04105 0.71 +0.4
817,405 + LU632_RS04105 0.73 -0.1
817,405 + LU632_RS04105 0.73 -0.2
817,406 - LU632_RS04105 0.73 +0.0
817,406 - LU632_RS04105 0.73 +0.8
817,406 - LU632_RS04105 0.73 -0.5
817,463 + LU632_RS04105 0.79 -0.3
817,527 - LU632_RS04105 0.85 +0.0
817,553 - LU632_RS04105 0.88 +1.5
817,553 - LU632_RS04105 0.88 +0.3
817,564 - LU632_RS04105 0.89 +1.1
817,634 - -0.4
817,639 - -1.4
817,712 + -1.2
817,712 + -0.4
817,718 + +0.2
817,782 + +0.8
817,783 - -0.3
817,783 - -0.4
817,936 + LU632_RS04110 0.18 +0.4
817,936 + LU632_RS04110 0.18 +0.2
818,127 + LU632_RS04110 0.41 -1.1
818,128 - LU632_RS04110 0.41 -0.1
818,243 + LU632_RS04110 0.55 -0.4
818,244 - LU632_RS04110 0.56 +1.4
818,308 - LU632_RS04110 0.63 +0.4
818,506 + LU632_RS04110 0.87 +0.4
818,535 + -0.0
818,535 + -0.3
818,536 - +0.4
818,536 - +0.2
818,536 - -1.8
818,536 - +0.3
818,585 - +0.3
818,585 - +0.3
818,602 + -0.6
818,625 - +0.8
818,716 + LU632_RS04115 0.15 +1.4
818,807 + LU632_RS04115 0.34 +0.1
818,921 + LU632_RS04115 0.57 -0.1
818,922 - LU632_RS04115 0.57 +0.8
818,922 - LU632_RS04115 0.57 +0.2
818,922 - LU632_RS04115 0.57 +0.8
818,926 + LU632_RS04115 0.58 -0.7
819,007 + LU632_RS04115 0.75 +1.0
819,007 + LU632_RS04115 0.75 +0.8
819,057 + LU632_RS04115 0.86 -1.0
819,057 + LU632_RS04115 0.86 +0.5
819,057 + LU632_RS04115 0.86 +1.8
819,156 + +0.8
819,171 + -0.1
819,228 + radC LU632_RS04120 0.19 +0.3
819,229 - radC LU632_RS04120 0.19 -0.2
819,352 + radC LU632_RS04120 0.45 +2.8
819,353 - radC LU632_RS04120 0.45 -1.2

Or see this region's nucleotide sequence