Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03570 and LU632_RS03575 are separated by 4 nucleotides LU632_RS03575 and LU632_RS03580 are separated by 93 nucleotides LU632_RS03580 and LU632_RS03585 overlap by 1 nucleotides LU632_RS03585 and LU632_RS03590 overlap by 10 nucleotides LU632_RS03590 and LU632_RS03595 overlap by 17 nucleotides LU632_RS03595 and lysB overlap by 4 nucleotides
LU632_RS03570: LU632_RS03570 - phage major capsid protein, P2 family, at 722,707 to 723,774
_RS03570
LU632_RS03575: LU632_RS03575 - terminase endonuclease subunit, at 723,779 to 724,528
_RS03575
LU632_RS03580: LU632_RS03580 - head completion/stabilization protein, at 724,622 to 725,131
_RS03580
LU632_RS03585: LU632_RS03585 - tail protein X, at 725,131 to 725,334
_RS03585
LU632_RS03590: LU632_RS03590 - phage holin family protein, at 725,325 to 725,546
_RS03590
LU632_RS03595: LU632_RS03595 - lysozyme, at 725,530 to 726,039
_RS03595
LU632_RS03600: lysB - Rz-like lysis system protein LysB, at 726,036 to 726,449
lysB
Position (kb) 724
725
726 Strain fitness (log2 ratio) -1
0
1 at 723.662 kb on - strand, within LU632_RS03570 at 723.682 kb on + strand at 723.698 kb on - strand at 723.972 kb on - strand, within LU632_RS03575 at 724.106 kb on + strand, within LU632_RS03575 at 724.142 kb on + strand, within LU632_RS03575 at 724.143 kb on - strand, within LU632_RS03575 at 724.143 kb on - strand, within LU632_RS03575 at 724.143 kb on - strand, within LU632_RS03575 at 724.447 kb on + strand, within LU632_RS03575 at 724.526 kb on + strand at 724.609 kb on + strand at 724.610 kb on - strand at 724.633 kb on - strand at 724.707 kb on + strand, within LU632_RS03580 at 724.707 kb on + strand, within LU632_RS03580 at 724.708 kb on + strand, within LU632_RS03580 at 724.712 kb on - strand, within LU632_RS03580 at 724.717 kb on + strand, within LU632_RS03580 at 724.944 kb on - strand, within LU632_RS03580 at 724.982 kb on + strand, within LU632_RS03580 at 724.982 kb on + strand, within LU632_RS03580 at 724.983 kb on - strand, within LU632_RS03580 at 725.325 kb on - strand at 725.336 kb on + strand at 725.424 kb on + strand, within LU632_RS03590 at 725.425 kb on - strand, within LU632_RS03590 at 725.425 kb on - strand, within LU632_RS03590 at 725.905 kb on + strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.959 kb on + strand, within LU632_RS03595 at 725.959 kb on + strand, within LU632_RS03595 at 726.043 kb on + strand at 726.043 kb on + strand at 726.044 kb on - strand at 726.110 kb on - strand, within lysB
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 723,662 - LU632_RS03570 0.89 +0.8 723,682 + +0.3 723,698 - -0.6 723,972 - LU632_RS03575 0.26 -0.3 724,106 + LU632_RS03575 0.44 -0.3 724,142 + LU632_RS03575 0.48 +0.2 724,143 - LU632_RS03575 0.49 +0.1 724,143 - LU632_RS03575 0.49 +0.3 724,143 - LU632_RS03575 0.49 +0.6 724,447 + LU632_RS03575 0.89 +0.2 724,526 + +0.1 724,609 + -0.2 724,610 - +1.1 724,633 - +0.4 724,707 + LU632_RS03580 0.17 -0.2 724,707 + LU632_RS03580 0.17 -1.2 724,708 + LU632_RS03580 0.17 -0.3 724,712 - LU632_RS03580 0.18 -0.1 724,717 + LU632_RS03580 0.19 +0.2 724,944 - LU632_RS03580 0.63 +0.4 724,982 + LU632_RS03580 0.71 -0.8 724,982 + LU632_RS03580 0.71 -0.2 724,983 - LU632_RS03580 0.71 +0.2 725,325 - -0.8 725,336 + -0.2 725,424 + LU632_RS03590 0.45 -0.0 725,425 - LU632_RS03590 0.45 +0.2 725,425 - LU632_RS03590 0.45 +1.2 725,905 + LU632_RS03595 0.74 -0.0 725,906 - LU632_RS03595 0.74 -0.7 725,906 - LU632_RS03595 0.74 +0.6 725,906 - LU632_RS03595 0.74 -0.1 725,959 + LU632_RS03595 0.84 -0.4 725,959 + LU632_RS03595 0.84 -1.2 726,043 + +0.2 726,043 + -0.5 726,044 - -0.6 726,110 - lysB LU632_RS03600 0.18 +0.6
Or see this region's nucleotide sequence