Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03340 and LU632_RS03345 are separated by 99 nucleotides LU632_RS03345 and LU632_RS03350 are separated by 380 nucleotides
LU632_RS03340: LU632_RS03340 - iron ABC transporter permease, at 684,573 to 686,069
_RS03340
LU632_RS03345: LU632_RS03345 - iron ABC transporter substrate-binding protein, at 686,169 to 687,173
_RS03345
LU632_RS03350: LU632_RS03350 - IS5 family transposase, at 687,554 to 688,397
_RS03350
Position (kb) 686
687
688 Strain fitness (log2 ratio) -1
0
1
2 at 685.176 kb on + strand, within LU632_RS03340 at 685.446 kb on - strand, within LU632_RS03340 at 685.534 kb on + strand, within LU632_RS03340 at 685.654 kb on + strand, within LU632_RS03340 at 685.787 kb on - strand, within LU632_RS03340 at 685.860 kb on - strand, within LU632_RS03340 at 685.917 kb on - strand, within LU632_RS03340 at 686.069 kb on + strand at 686.302 kb on + strand, within LU632_RS03345 at 686.303 kb on - strand, within LU632_RS03345 at 686.420 kb on + strand, within LU632_RS03345 at 686.456 kb on - strand, within LU632_RS03345 at 686.458 kb on + strand, within LU632_RS03345 at 686.515 kb on + strand, within LU632_RS03345 at 686.521 kb on + strand, within LU632_RS03345 at 686.577 kb on - strand, within LU632_RS03345 at 686.910 kb on - strand, within LU632_RS03345 at 686.910 kb on - strand, within LU632_RS03345 at 686.910 kb on - strand, within LU632_RS03345 at 687.033 kb on - strand, within LU632_RS03345 at 687.156 kb on - strand at 687.204 kb on + strand at 687.205 kb on - strand at 687.295 kb on + strand at 687.381 kb on + strand at 687.382 kb on - strand at 687.424 kb on + strand at 687.425 kb on - strand at 687.457 kb on - strand at 687.467 kb on - strand at 687.475 kb on - strand at 687.503 kb on + strand at 687.513 kb on + strand at 687.513 kb on + strand at 687.513 kb on + strand at 687.514 kb on - strand at 687.514 kb on - strand at 687.555 kb on + strand at 687.560 kb on - strand at 687.631 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 685,176 + LU632_RS03340 0.40 -1.3 685,446 - LU632_RS03340 0.58 +0.0 685,534 + LU632_RS03340 0.64 -0.1 685,654 + LU632_RS03340 0.72 -0.0 685,787 - LU632_RS03340 0.81 -1.0 685,860 - LU632_RS03340 0.86 +0.0 685,917 - LU632_RS03340 0.90 +1.3 686,069 + -0.2 686,302 + LU632_RS03345 0.13 +0.9 686,303 - LU632_RS03345 0.13 +2.1 686,420 + LU632_RS03345 0.25 +0.8 686,456 - LU632_RS03345 0.29 -1.3 686,458 + LU632_RS03345 0.29 -1.1 686,515 + LU632_RS03345 0.34 +0.2 686,521 + LU632_RS03345 0.35 +0.5 686,577 - LU632_RS03345 0.41 -0.4 686,910 - LU632_RS03345 0.74 +0.5 686,910 - LU632_RS03345 0.74 +0.7 686,910 - LU632_RS03345 0.74 +0.0 687,033 - LU632_RS03345 0.86 -0.1 687,156 - +0.3 687,204 + +1.4 687,205 - +0.3 687,295 + -0.4 687,381 + +1.3 687,382 - +0.5 687,424 + +0.5 687,425 - -0.4 687,457 - +0.2 687,467 - -0.1 687,475 - +0.1 687,503 + -0.4 687,513 + +0.2 687,513 + -0.4 687,513 + +0.8 687,514 - +0.1 687,514 - +0.2 687,555 + -0.0 687,560 - -0.6 687,631 + +0.3
Or see this region's nucleotide sequence