Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03255 and LU632_RS03260 are separated by 1 nucleotides LU632_RS03260 and LU632_RS03265 overlap by 4 nucleotides LU632_RS03265 and LU632_RS03270 are separated by 156 nucleotides LU632_RS03270 and LU632_RS03275 are separated by 47 nucleotides LU632_RS03275 and LU632_RS03280 are separated by 202 nucleotides
LU632_RS03255: LU632_RS03255 - harpin HrpZ family protein, at 662,910 to 664,127
_RS03255
LU632_RS03260: LU632_RS03260 - type III secretion system chaperone, at 664,129 to 664,704
_RS03260
LU632_RS03265: LU632_RS03265 - avirulence protein, at 664,701 to 665,930
_RS03265
LU632_RS03270: LU632_RS03270 - hypothetical protein, at 666,087 to 666,284
_RS03270
LU632_RS03275: LU632_RS03275 - hypothetical protein, at 666,332 to 666,490
_RS03275
LU632_RS03280: LU632_RS03280 - AvrE-family type 3 secretion system effector, at 666,693 to 672,020
_RS03280
Position (kb) 664
665
666 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 663.859 kb on - strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.956 kb on - strand, within LU632_RS03255 at 663.956 kb on - strand, within LU632_RS03255 at 663.956 kb on - strand, within LU632_RS03255 at 663.956 kb on - strand, within LU632_RS03255 at 664.095 kb on - strand at 664.210 kb on + strand, within LU632_RS03260 at 664.234 kb on - strand, within LU632_RS03260 at 664.354 kb on + strand, within LU632_RS03260 at 664.514 kb on + strand, within LU632_RS03260 at 664.515 kb on - strand, within LU632_RS03260 at 664.515 kb on - strand, within LU632_RS03260 at 664.616 kb on + strand, within LU632_RS03260 at 664.617 kb on - strand, within LU632_RS03260 at 664.637 kb on + strand, within LU632_RS03260 at 664.638 kb on - strand, within LU632_RS03260 at 664.708 kb on + strand at 664.730 kb on + strand at 664.730 kb on + strand at 664.731 kb on - strand at 664.731 kb on - strand at 664.851 kb on - strand, within LU632_RS03265 at 664.851 kb on - strand, within LU632_RS03265 at 664.853 kb on + strand, within LU632_RS03265 at 664.854 kb on - strand, within LU632_RS03265 at 664.981 kb on + strand, within LU632_RS03265 at 664.984 kb on + strand, within LU632_RS03265 at 664.985 kb on - strand, within LU632_RS03265 at 665.067 kb on - strand, within LU632_RS03265 at 665.067 kb on - strand, within LU632_RS03265 at 665.169 kb on + strand, within LU632_RS03265 at 665.373 kb on - strand, within LU632_RS03265 at 665.387 kb on + strand, within LU632_RS03265 at 665.387 kb on + strand, within LU632_RS03265 at 665.446 kb on + strand, within LU632_RS03265 at 665.446 kb on - strand, within LU632_RS03265 at 665.447 kb on - strand, within LU632_RS03265 at 665.504 kb on + strand, within LU632_RS03265 at 665.544 kb on - strand, within LU632_RS03265 at 665.603 kb on + strand, within LU632_RS03265 at 665.603 kb on + strand, within LU632_RS03265 at 665.618 kb on + strand, within LU632_RS03265 at 665.618 kb on + strand, within LU632_RS03265 at 665.635 kb on - strand, within LU632_RS03265 at 665.636 kb on + strand, within LU632_RS03265 at 665.636 kb on + strand, within LU632_RS03265 at 665.636 kb on + strand, within LU632_RS03265 at 665.636 kb on + strand, within LU632_RS03265 at 665.637 kb on - strand, within LU632_RS03265 at 665.637 kb on - strand, within LU632_RS03265 at 665.653 kb on - strand, within LU632_RS03265 at 665.653 kb on - strand, within LU632_RS03265 at 665.653 kb on - strand, within LU632_RS03265 at 665.706 kb on - strand, within LU632_RS03265 at 665.848 kb on - strand at 665.935 kb on - strand at 665.946 kb on - strand at 666.114 kb on - strand, within LU632_RS03270 at 666.322 kb on + strand at 666.327 kb on + strand at 666.542 kb on - strand at 666.620 kb on + strand at 666.657 kb on + strand at 666.658 kb on - strand at 666.671 kb on + strand at 666.730 kb on + strand at 666.731 kb on - strand at 666.797 kb on + strand at 666.798 kb on - strand at 666.798 kb on - strand at 666.857 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 663,859 - LU632_RS03255 0.78 -1.5 663,955 + LU632_RS03255 0.86 +0.1 663,955 + LU632_RS03255 0.86 +0.1 663,955 + LU632_RS03255 0.86 +0.2 663,955 + LU632_RS03255 0.86 +2.9 663,955 + LU632_RS03255 0.86 +0.7 663,955 + LU632_RS03255 0.86 +0.2 663,955 + LU632_RS03255 0.86 +1.9 663,955 + LU632_RS03255 0.86 +0.7 663,955 + LU632_RS03255 0.86 -0.1 663,956 - LU632_RS03255 0.86 -0.5 663,956 - LU632_RS03255 0.86 +0.3 663,956 - LU632_RS03255 0.86 +0.5 663,956 - LU632_RS03255 0.86 +0.4 664,095 - -0.6 664,210 + LU632_RS03260 0.14 +0.9 664,234 - LU632_RS03260 0.18 +0.0 664,354 + LU632_RS03260 0.39 +0.0 664,514 + LU632_RS03260 0.67 -1.5 664,515 - LU632_RS03260 0.67 +0.1 664,515 - LU632_RS03260 0.67 -0.3 664,616 + LU632_RS03260 0.85 +0.7 664,617 - LU632_RS03260 0.85 -0.3 664,637 + LU632_RS03260 0.88 -0.2 664,638 - LU632_RS03260 0.88 -0.0 664,708 + +0.5 664,730 + -0.8 664,730 + -0.3 664,731 - +0.9 664,731 - -0.6 664,851 - LU632_RS03265 0.12 -0.0 664,851 - LU632_RS03265 0.12 +0.5 664,853 + LU632_RS03265 0.12 +0.5 664,854 - LU632_RS03265 0.12 +2.1 664,981 + LU632_RS03265 0.23 +0.7 664,984 + LU632_RS03265 0.23 -0.1 664,985 - LU632_RS03265 0.23 -0.2 665,067 - LU632_RS03265 0.30 +0.9 665,067 - LU632_RS03265 0.30 -0.6 665,169 + LU632_RS03265 0.38 +0.2 665,373 - LU632_RS03265 0.55 -0.2 665,387 + LU632_RS03265 0.56 -1.5 665,387 + LU632_RS03265 0.56 -2.3 665,446 + LU632_RS03265 0.61 -0.8 665,446 - LU632_RS03265 0.61 -0.3 665,447 - LU632_RS03265 0.61 -0.6 665,504 + LU632_RS03265 0.65 +0.3 665,544 - LU632_RS03265 0.69 +0.1 665,603 + LU632_RS03265 0.73 -0.3 665,603 + LU632_RS03265 0.73 +0.9 665,618 + LU632_RS03265 0.75 -0.6 665,618 + LU632_RS03265 0.75 -0.1 665,635 - LU632_RS03265 0.76 +0.5 665,636 + LU632_RS03265 0.76 -0.6 665,636 + LU632_RS03265 0.76 +0.4 665,636 + LU632_RS03265 0.76 +0.1 665,636 + LU632_RS03265 0.76 -0.4 665,637 - LU632_RS03265 0.76 +0.6 665,637 - LU632_RS03265 0.76 +1.5 665,653 - LU632_RS03265 0.77 +0.6 665,653 - LU632_RS03265 0.77 -0.2 665,653 - LU632_RS03265 0.77 +2.6 665,706 - LU632_RS03265 0.82 +0.4 665,848 - -0.3 665,935 - -0.3 665,946 - -0.5 666,114 - LU632_RS03270 0.14 -0.0 666,322 + +1.2 666,327 + -0.1 666,542 - -0.3 666,620 + +0.0 666,657 + +0.4 666,658 - -1.8 666,671 + -0.8 666,730 + -0.1 666,731 - -0.5 666,797 + -0.2 666,798 - -0.2 666,798 - +0.1 666,857 + -0.7
Or see this region's nucleotide sequence