Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03020 and hofC are separated by 50 nucleotides hofC and gspE overlap by 23 nucleotides
LU632_RS03020: LU632_RS03020 - GMP reductase, at 616,790 to 617,830
_RS03020
LU632_RS03025: hofC - protein transport protein HofC, at 617,881 to 619,080
hofC
LU632_RS03030: gspE - type II secretion system protein GspE, at 619,058 to 620,461
gspE
Position (kb) 617
618
619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 616.936 kb on + strand, within LU632_RS03020 at 616.948 kb on + strand, within LU632_RS03020 at 616.969 kb on + strand, within LU632_RS03020 at 616.970 kb on - strand, within LU632_RS03020 at 616.970 kb on - strand, within LU632_RS03020 at 616.970 kb on - strand, within LU632_RS03020 at 616.970 kb on - strand, within LU632_RS03020 at 617.025 kb on - strand, within LU632_RS03020 at 617.025 kb on - strand, within LU632_RS03020 at 617.025 kb on - strand, within LU632_RS03020 at 617.073 kb on + strand, within LU632_RS03020 at 617.095 kb on + strand, within LU632_RS03020 at 617.123 kb on - strand, within LU632_RS03020 at 617.128 kb on - strand, within LU632_RS03020 at 617.178 kb on + strand, within LU632_RS03020 at 617.179 kb on - strand, within LU632_RS03020 at 617.260 kb on + strand, within LU632_RS03020 at 617.311 kb on + strand, within LU632_RS03020 at 617.312 kb on - strand, within LU632_RS03020 at 617.370 kb on + strand, within LU632_RS03020 at 617.397 kb on + strand, within LU632_RS03020 at 617.471 kb on - strand, within LU632_RS03020 at 617.472 kb on + strand, within LU632_RS03020 at 617.472 kb on + strand, within LU632_RS03020 at 617.472 kb on + strand, within LU632_RS03020 at 617.472 kb on + strand, within LU632_RS03020 at 617.473 kb on - strand, within LU632_RS03020 at 617.473 kb on - strand, within LU632_RS03020 at 617.473 kb on - strand, within LU632_RS03020 at 617.518 kb on + strand, within LU632_RS03020 at 617.519 kb on - strand, within LU632_RS03020 at 617.578 kb on + strand, within LU632_RS03020 at 617.578 kb on + strand, within LU632_RS03020 at 617.642 kb on + strand, within LU632_RS03020 at 617.692 kb on - strand, within LU632_RS03020 at 617.696 kb on - strand, within LU632_RS03020 at 617.710 kb on + strand, within LU632_RS03020 at 617.737 kb on + strand at 617.741 kb on + strand at 617.742 kb on - strand at 617.742 kb on - strand at 617.868 kb on + strand at 617.869 kb on - strand at 617.869 kb on - strand at 617.869 kb on - strand at 617.918 kb on + strand at 617.956 kb on + strand at 617.995 kb on - strand at 618.048 kb on + strand, within hofC at 618.048 kb on + strand, within hofC at 618.048 kb on + strand, within hofC at 618.049 kb on - strand, within hofC at 618.049 kb on - strand, within hofC at 618.049 kb on - strand, within hofC at 618.049 kb on - strand, within hofC at 618.049 kb on - strand, within hofC at 618.092 kb on + strand, within hofC at 618.132 kb on + strand, within hofC at 618.132 kb on + strand, within hofC at 618.133 kb on - strand, within hofC at 618.135 kb on - strand, within hofC at 618.135 kb on - strand, within hofC at 618.135 kb on - strand, within hofC at 618.136 kb on + strand, within hofC at 618.136 kb on + strand, within hofC at 618.137 kb on - strand, within hofC at 618.156 kb on + strand, within hofC at 618.157 kb on - strand, within hofC at 618.223 kb on + strand, within hofC at 618.228 kb on + strand, within hofC at 618.274 kb on - strand, within hofC at 618.274 kb on - strand, within hofC at 618.274 kb on - strand, within hofC at 618.277 kb on + strand, within hofC at 618.278 kb on - strand, within hofC at 618.278 kb on - strand, within hofC at 618.348 kb on + strand, within hofC at 618.395 kb on + strand, within hofC at 618.406 kb on + strand, within hofC at 618.406 kb on + strand, within hofC at 618.407 kb on - strand, within hofC at 618.460 kb on + strand, within hofC at 618.460 kb on + strand, within hofC at 618.503 kb on + strand, within hofC at 618.503 kb on + strand, within hofC at 618.503 kb on + strand, within hofC at 618.505 kb on + strand, within hofC at 618.506 kb on - strand, within hofC at 618.527 kb on - strand, within hofC at 618.613 kb on + strand, within hofC at 618.666 kb on + strand, within hofC at 618.769 kb on - strand, within hofC at 618.864 kb on + strand, within hofC at 618.869 kb on - strand, within hofC at 618.920 kb on - strand, within hofC at 618.974 kb on - strand at 619.103 kb on + strand at 619.120 kb on + strand at 619.158 kb on - strand at 619.188 kb on - strand at 619.193 kb on + strand at 619.194 kb on - strand at 619.194 kb on - strand at 619.282 kb on - strand, within gspE at 619.504 kb on + strand, within gspE at 619.505 kb on - strand, within gspE at 619.508 kb on + strand, within gspE at 619.513 kb on + strand, within gspE at 619.513 kb on + strand, within gspE at 619.591 kb on + strand, within gspE at 619.591 kb on + strand, within gspE at 619.592 kb on - strand, within gspE at 619.595 kb on - strand, within gspE at 619.661 kb on + strand, within gspE at 619.662 kb on - strand, within gspE at 619.662 kb on - strand, within gspE at 619.714 kb on + strand, within gspE at 619.743 kb on + strand, within gspE at 619.744 kb on - strand, within gspE at 619.744 kb on - strand, within gspE at 619.744 kb on - strand, within gspE at 619.758 kb on + strand, within gspE at 619.903 kb on + strand, within gspE at 619.903 kb on + strand, within gspE at 620.008 kb on + strand, within gspE at 620.009 kb on - strand, within gspE
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 616,936 + LU632_RS03020 0.14 +0.1 616,948 + LU632_RS03020 0.15 -0.1 616,969 + LU632_RS03020 0.17 -0.2 616,970 - LU632_RS03020 0.17 +0.7 616,970 - LU632_RS03020 0.17 +0.9 616,970 - LU632_RS03020 0.17 +0.3 616,970 - LU632_RS03020 0.17 +0.9 617,025 - LU632_RS03020 0.23 -1.7 617,025 - LU632_RS03020 0.23 +1.1 617,025 - LU632_RS03020 0.23 -0.4 617,073 + LU632_RS03020 0.27 +0.5 617,095 + LU632_RS03020 0.29 -0.1 617,123 - LU632_RS03020 0.32 +1.1 617,128 - LU632_RS03020 0.32 +0.0 617,178 + LU632_RS03020 0.37 +0.0 617,179 - LU632_RS03020 0.37 +0.2 617,260 + LU632_RS03020 0.45 -0.3 617,311 + LU632_RS03020 0.50 -0.4 617,312 - LU632_RS03020 0.50 -0.4 617,370 + LU632_RS03020 0.56 -0.4 617,397 + LU632_RS03020 0.58 +0.2 617,471 - LU632_RS03020 0.65 -0.3 617,472 + LU632_RS03020 0.66 +0.7 617,472 + LU632_RS03020 0.66 -0.2 617,472 + LU632_RS03020 0.66 -0.6 617,472 + LU632_RS03020 0.66 +0.3 617,473 - LU632_RS03020 0.66 +0.4 617,473 - LU632_RS03020 0.66 -0.2 617,473 - LU632_RS03020 0.66 -0.7 617,518 + LU632_RS03020 0.70 +0.2 617,519 - LU632_RS03020 0.70 +0.2 617,578 + LU632_RS03020 0.76 +0.3 617,578 + LU632_RS03020 0.76 +1.9 617,642 + LU632_RS03020 0.82 -0.3 617,692 - LU632_RS03020 0.87 -0.2 617,696 - LU632_RS03020 0.87 -0.7 617,710 + LU632_RS03020 0.88 +0.3 617,737 + +0.6 617,741 + -1.5 617,742 - -0.5 617,742 - -0.4 617,868 + +0.3 617,869 - -0.3 617,869 - +0.5 617,869 - +0.5 617,918 + -0.3 617,956 + -0.3 617,995 - -0.1 618,048 + hofC LU632_RS03025 0.14 -3.6 618,048 + hofC LU632_RS03025 0.14 -0.3 618,048 + hofC LU632_RS03025 0.14 +0.2 618,049 - hofC LU632_RS03025 0.14 -0.1 618,049 - hofC LU632_RS03025 0.14 -0.4 618,049 - hofC LU632_RS03025 0.14 -0.6 618,049 - hofC LU632_RS03025 0.14 -1.7 618,049 - hofC LU632_RS03025 0.14 -1.0 618,092 + hofC LU632_RS03025 0.18 +1.1 618,132 + hofC LU632_RS03025 0.21 -2.2 618,132 + hofC LU632_RS03025 0.21 -0.7 618,133 - hofC LU632_RS03025 0.21 -0.7 618,135 - hofC LU632_RS03025 0.21 -0.7 618,135 - hofC LU632_RS03025 0.21 -0.5 618,135 - hofC LU632_RS03025 0.21 +0.1 618,136 + hofC LU632_RS03025 0.21 +0.1 618,136 + hofC LU632_RS03025 0.21 +0.6 618,137 - hofC LU632_RS03025 0.21 +0.0 618,156 + hofC LU632_RS03025 0.23 -0.3 618,157 - hofC LU632_RS03025 0.23 -0.3 618,223 + hofC LU632_RS03025 0.28 +0.1 618,228 + hofC LU632_RS03025 0.29 -0.3 618,274 - hofC LU632_RS03025 0.33 +0.4 618,274 - hofC LU632_RS03025 0.33 +0.0 618,274 - hofC LU632_RS03025 0.33 -0.4 618,277 + hofC LU632_RS03025 0.33 -0.7 618,278 - hofC LU632_RS03025 0.33 -0.4 618,278 - hofC LU632_RS03025 0.33 -0.2 618,348 + hofC LU632_RS03025 0.39 -0.4 618,395 + hofC LU632_RS03025 0.43 +0.4 618,406 + hofC LU632_RS03025 0.44 +0.1 618,406 + hofC LU632_RS03025 0.44 -0.9 618,407 - hofC LU632_RS03025 0.44 -0.2 618,460 + hofC LU632_RS03025 0.48 +1.6 618,460 + hofC LU632_RS03025 0.48 -1.2 618,503 + hofC LU632_RS03025 0.52 -0.4 618,503 + hofC LU632_RS03025 0.52 -0.4 618,503 + hofC LU632_RS03025 0.52 -0.9 618,505 + hofC LU632_RS03025 0.52 +0.4 618,506 - hofC LU632_RS03025 0.52 -0.2 618,527 - hofC LU632_RS03025 0.54 -0.1 618,613 + hofC LU632_RS03025 0.61 +1.4 618,666 + hofC LU632_RS03025 0.65 -1.0 618,769 - hofC LU632_RS03025 0.74 -0.4 618,864 + hofC LU632_RS03025 0.82 +0.4 618,869 - hofC LU632_RS03025 0.82 -0.4 618,920 - hofC LU632_RS03025 0.87 -0.6 618,974 - -0.0 619,103 + +0.4 619,120 + -0.4 619,158 - +0.7 619,188 - +1.8 619,193 + -0.2 619,194 - +0.3 619,194 - -0.2 619,282 - gspE LU632_RS03030 0.16 -0.2 619,504 + gspE LU632_RS03030 0.32 -0.2 619,505 - gspE LU632_RS03030 0.32 -0.2 619,508 + gspE LU632_RS03030 0.32 -0.4 619,513 + gspE LU632_RS03030 0.32 -0.7 619,513 + gspE LU632_RS03030 0.32 -0.3 619,591 + gspE LU632_RS03030 0.38 -0.7 619,591 + gspE LU632_RS03030 0.38 -0.4 619,592 - gspE LU632_RS03030 0.38 -0.3 619,595 - gspE LU632_RS03030 0.38 -1.3 619,661 + gspE LU632_RS03030 0.43 -0.3 619,662 - gspE LU632_RS03030 0.43 -1.6 619,662 - gspE LU632_RS03030 0.43 +0.2 619,714 + gspE LU632_RS03030 0.47 +0.2 619,743 + gspE LU632_RS03030 0.49 +0.5 619,744 - gspE LU632_RS03030 0.49 -0.3 619,744 - gspE LU632_RS03030 0.49 +0.0 619,744 - gspE LU632_RS03030 0.49 +0.8 619,758 + gspE LU632_RS03030 0.50 -0.4 619,903 + gspE LU632_RS03030 0.60 +0.0 619,903 + gspE LU632_RS03030 0.60 -1.5 620,008 + gspE LU632_RS03030 0.68 +0.4 620,009 - gspE LU632_RS03030 0.68 +0.9
Or see this region's nucleotide sequence