Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02845 and LU632_RS02850 are separated by 127 nucleotides LU632_RS02850 and LU632_RS02855 are separated by 152 nucleotides LU632_RS02855 and LU632_RS02860 are separated by 319 nucleotides LU632_RS02860 and leuD are separated by 44 nucleotides
LU632_RS02845: LU632_RS02845 - MFS transporter, at 580,002 to 581,180
_RS02845
LU632_RS02850: LU632_RS02850 - hypothetical protein, at 581,308 to 581,478
_RS02850
LU632_RS02855: LU632_RS02855 - hypothetical protein, at 581,631 to 581,990
_RS02855
LU632_RS02860: LU632_RS02860 - hypothetical protein, at 582,310 to 582,480
_RS02860
LU632_RS02865: leuD - 3-isopropylmalate dehydratase small subunit, at 582,525 to 583,130
leuD
Position (kb) 581
582 Strain fitness (log2 ratio) -2
-1
0
1
2 at 580.661 kb on - strand, within LU632_RS02845 at 580.692 kb on - strand, within LU632_RS02845 at 580.765 kb on + strand, within LU632_RS02845 at 580.821 kb on + strand, within LU632_RS02845 at 580.848 kb on - strand, within LU632_RS02845 at 580.848 kb on - strand, within LU632_RS02845 at 580.928 kb on - strand, within LU632_RS02845 at 580.930 kb on + strand, within LU632_RS02845 at 580.930 kb on + strand, within LU632_RS02845 at 580.996 kb on + strand, within LU632_RS02845 at 581.214 kb on + strand at 581.214 kb on + strand at 581.214 kb on + strand at 581.214 kb on + strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.262 kb on + strand at 581.278 kb on + strand at 581.278 kb on + strand at 581.278 kb on + strand at 581.278 kb on + strand at 581.279 kb on - strand at 581.282 kb on + strand at 581.282 kb on + strand at 581.282 kb on + strand at 581.282 kb on + strand at 581.283 kb on - strand at 581.283 kb on - strand at 581.283 kb on - strand at 581.283 kb on - strand at 581.427 kb on + strand, within LU632_RS02850 at 581.476 kb on + strand at 581.476 kb on + strand at 581.476 kb on + strand at 581.530 kb on - strand at 581.530 kb on - strand at 581.583 kb on + strand at 581.583 kb on + strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.906 kb on + strand, within LU632_RS02855 at 581.907 kb on - strand, within LU632_RS02855 at 581.912 kb on + strand, within LU632_RS02855 at 581.913 kb on - strand, within LU632_RS02855 at 581.913 kb on - strand, within LU632_RS02855 at 582.018 kb on + strand at 582.018 kb on + strand at 582.018 kb on + strand at 582.018 kb on + strand at 582.019 kb on - strand at 582.024 kb on + strand at 582.024 kb on + strand at 582.025 kb on - strand at 582.197 kb on + strand at 582.224 kb on + strand at 582.261 kb on + strand at 582.261 kb on + strand at 582.261 kb on + strand at 582.261 kb on + strand at 582.262 kb on - strand at 582.262 kb on - strand at 582.262 kb on - strand at 582.262 kb on - strand at 582.314 kb on + strand at 582.397 kb on + strand, within LU632_RS02860 at 582.397 kb on + strand, within LU632_RS02860 at 582.397 kb on + strand, within LU632_RS02860 at 582.397 kb on + strand, within LU632_RS02860 at 582.408 kb on - strand, within LU632_RS02860 at 582.427 kb on - strand, within LU632_RS02860 at 582.479 kb on - strand at 582.520 kb on + strand at 582.596 kb on + strand, within leuD at 582.596 kb on + strand, within leuD at 582.675 kb on - strand, within leuD at 582.675 kb on - strand, within leuD at 582.759 kb on + strand, within leuD at 582.760 kb on - strand, within leuD at 582.795 kb on - strand, within leuD at 582.912 kb on - strand, within leuD at 582.912 kb on - strand, within leuD at 582.941 kb on + strand, within leuD at 582.941 kb on + strand, within leuD at 582.942 kb on - strand, within leuD
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 580,661 - LU632_RS02845 0.56 +0.0 580,692 - LU632_RS02845 0.59 -0.3 580,765 + LU632_RS02845 0.65 -0.1 580,821 + LU632_RS02845 0.69 +0.1 580,848 - LU632_RS02845 0.72 -0.3 580,848 - LU632_RS02845 0.72 -0.4 580,928 - LU632_RS02845 0.79 -1.2 580,930 + LU632_RS02845 0.79 +0.4 580,930 + LU632_RS02845 0.79 -0.3 580,996 + LU632_RS02845 0.84 -0.5 581,214 + +0.2 581,214 + +0.1 581,214 + -0.3 581,214 + +0.4 581,215 - +0.0 581,215 - -0.6 581,215 - +0.6 581,215 - +0.2 581,215 - +0.1 581,262 + -0.7 581,278 + +0.2 581,278 + +0.1 581,278 + +1.1 581,278 + -0.1 581,279 - -0.2 581,282 + -0.5 581,282 + +0.4 581,282 + +0.2 581,282 + -0.2 581,283 - -0.6 581,283 - -0.1 581,283 - +0.7 581,283 - -0.3 581,427 + LU632_RS02850 0.70 -0.6 581,476 + +0.2 581,476 + -0.7 581,476 + -0.7 581,530 - -0.2 581,530 - -0.9 581,583 + -0.3 581,583 + +0.9 581,584 - -0.7 581,584 - +0.5 581,584 - -0.5 581,584 - -0.5 581,822 + LU632_RS02855 0.53 -1.4 581,822 + LU632_RS02855 0.53 +0.9 581,822 + LU632_RS02855 0.53 -1.1 581,822 + LU632_RS02855 0.53 -0.0 581,906 + LU632_RS02855 0.76 +1.3 581,907 - LU632_RS02855 0.77 +0.1 581,912 + LU632_RS02855 0.78 +1.9 581,913 - LU632_RS02855 0.78 -0.7 581,913 - LU632_RS02855 0.78 -1.0 582,018 + +0.4 582,018 + -0.9 582,018 + -0.9 582,018 + +0.6 582,019 - -0.1 582,024 + +0.2 582,024 + -0.5 582,025 - +0.8 582,197 + +1.9 582,224 + -0.1 582,261 + +0.1 582,261 + -0.0 582,261 + +0.1 582,261 + +0.1 582,262 - +0.3 582,262 - -0.4 582,262 - +0.2 582,262 - -1.9 582,314 + +0.1 582,397 + LU632_RS02860 0.51 +0.6 582,397 + LU632_RS02860 0.51 -0.6 582,397 + LU632_RS02860 0.51 +0.5 582,397 + LU632_RS02860 0.51 +0.1 582,408 - LU632_RS02860 0.57 -0.5 582,427 - LU632_RS02860 0.68 +0.0 582,479 - +0.9 582,520 + +0.8 582,596 + leuD LU632_RS02865 0.12 -1.0 582,596 + leuD LU632_RS02865 0.12 -1.0 582,675 - leuD LU632_RS02865 0.25 -2.3 582,675 - leuD LU632_RS02865 0.25 -1.4 582,759 + leuD LU632_RS02865 0.39 -1.8 582,760 - leuD LU632_RS02865 0.39 -1.3 582,795 - leuD LU632_RS02865 0.45 -1.8 582,912 - leuD LU632_RS02865 0.64 +1.9 582,912 - leuD LU632_RS02865 0.64 -2.0 582,941 + leuD LU632_RS02865 0.69 -2.4 582,941 + leuD LU632_RS02865 0.69 -0.2 582,942 - leuD LU632_RS02865 0.69 -2.5
Or see this region's nucleotide sequence