Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02820 and thiQ are separated by 232 nucleotides thiQ and thiP overlap by 17 nucleotides thiP and thiB overlap by 25 nucleotides
LU632_RS02820: LU632_RS02820 - DedA family protein, at 573,647 to 574,414
_RS02820
LU632_RS02825: thiQ - thiamine ABC transporter ATP-binding protein ThiQ, at 574,647 to 575,348
thiQ
LU632_RS02830: thiP - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 575,332 to 576,942
thiP
LU632_RS02835: thiB - thiamine ABC transporter substrate binding subunit, at 576,918 to 577,904
thiB
Position (kb) 575
576
577 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 574.343 kb on - strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.412 kb on + strand at 574.489 kb on - strand at 574.493 kb on - strand at 574.494 kb on - strand at 574.649 kb on - strand at 574.748 kb on + strand, within thiQ at 574.748 kb on + strand, within thiQ at 574.748 kb on + strand, within thiQ at 574.791 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.809 kb on - strand, within thiQ at 574.809 kb on - strand, within thiQ at 574.824 kb on + strand, within thiQ at 574.824 kb on + strand, within thiQ at 574.825 kb on - strand, within thiQ at 574.825 kb on - strand, within thiQ at 575.013 kb on - strand, within thiQ at 575.091 kb on + strand, within thiQ at 575.283 kb on + strand at 575.284 kb on - strand at 575.284 kb on - strand at 575.317 kb on + strand at 575.333 kb on + strand at 575.343 kb on + strand at 575.639 kb on + strand, within thiP at 575.657 kb on + strand, within thiP at 575.658 kb on - strand, within thiP at 575.716 kb on + strand, within thiP at 575.716 kb on + strand, within thiP at 575.717 kb on - strand, within thiP at 575.717 kb on - strand, within thiP at 575.947 kb on + strand, within thiP at 575.947 kb on + strand, within thiP at 575.977 kb on + strand, within thiP at 575.980 kb on + strand, within thiP at 575.981 kb on - strand, within thiP at 576.088 kb on + strand, within thiP at 576.466 kb on + strand, within thiP at 576.467 kb on - strand, within thiP at 576.502 kb on + strand, within thiP at 576.503 kb on - strand, within thiP at 576.548 kb on + strand, within thiP at 576.549 kb on - strand, within thiP at 576.892 kb on + strand at 576.892 kb on + strand at 576.892 kb on + strand at 576.893 kb on - strand at 576.893 kb on - strand at 576.915 kb on + strand at 576.916 kb on - strand at 576.919 kb on + strand at 577.057 kb on + strand, within thiB at 577.058 kb on - strand, within thiB at 577.176 kb on + strand, within thiB at 577.177 kb on - strand, within thiB at 577.177 kb on - strand, within thiB at 577.201 kb on - strand, within thiB at 577.241 kb on - strand, within thiB at 577.256 kb on + strand, within thiB at 577.256 kb on + strand, within thiB at 577.256 kb on + strand, within thiB at 577.257 kb on - strand, within thiB at 577.258 kb on + strand, within thiB at 577.258 kb on + strand, within thiB at 577.258 kb on + strand, within thiB at 577.258 kb on + strand, within thiB at 577.259 kb on - strand, within thiB at 577.300 kb on + strand, within thiB at 577.511 kb on + strand, within thiB at 577.511 kb on + strand, within thiB at 577.511 kb on + strand, within thiB at 577.516 kb on + strand, within thiB at 577.516 kb on + strand, within thiB at 577.516 kb on + strand, within thiB at 577.517 kb on - strand, within thiB at 577.537 kb on + strand, within thiB at 577.741 kb on + strand, within thiB at 577.741 kb on + strand, within thiB at 577.822 kb on + strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.829 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 574,343 - -0.1 574,386 + -0.5 574,386 + -0.1 574,386 + -0.1 574,412 + -0.7 574,489 - +0.7 574,493 - -0.2 574,494 - -0.6 574,649 - -0.2 574,748 + thiQ LU632_RS02825 0.14 -1.4 574,748 + thiQ LU632_RS02825 0.14 -1.0 574,748 + thiQ LU632_RS02825 0.14 -1.8 574,791 + thiQ LU632_RS02825 0.21 -3.3 574,808 + thiQ LU632_RS02825 0.23 -1.4 574,808 + thiQ LU632_RS02825 0.23 -1.7 574,808 + thiQ LU632_RS02825 0.23 -1.0 574,809 - thiQ LU632_RS02825 0.23 -1.8 574,809 - thiQ LU632_RS02825 0.23 -0.1 574,824 + thiQ LU632_RS02825 0.25 -2.0 574,824 + thiQ LU632_RS02825 0.25 +0.3 574,825 - thiQ LU632_RS02825 0.25 -1.6 574,825 - thiQ LU632_RS02825 0.25 -1.2 575,013 - thiQ LU632_RS02825 0.52 -2.3 575,091 + thiQ LU632_RS02825 0.63 -0.7 575,283 + -0.9 575,284 - +0.3 575,284 - -1.4 575,317 + -1.1 575,333 + -1.5 575,343 + +0.5 575,639 + thiP LU632_RS02830 0.19 -1.1 575,657 + thiP LU632_RS02830 0.20 -1.4 575,658 - thiP LU632_RS02830 0.20 -2.7 575,716 + thiP LU632_RS02830 0.24 -0.7 575,716 + thiP LU632_RS02830 0.24 +0.0 575,717 - thiP LU632_RS02830 0.24 -1.5 575,717 - thiP LU632_RS02830 0.24 -1.6 575,947 + thiP LU632_RS02830 0.38 +1.1 575,947 + thiP LU632_RS02830 0.38 -1.1 575,977 + thiP LU632_RS02830 0.40 +0.9 575,980 + thiP LU632_RS02830 0.40 -2.3 575,981 - thiP LU632_RS02830 0.40 -1.6 576,088 + thiP LU632_RS02830 0.47 -1.8 576,466 + thiP LU632_RS02830 0.70 -0.9 576,467 - thiP LU632_RS02830 0.70 -0.4 576,502 + thiP LU632_RS02830 0.73 -1.1 576,503 - thiP LU632_RS02830 0.73 -1.5 576,548 + thiP LU632_RS02830 0.75 -1.1 576,549 - thiP LU632_RS02830 0.76 -2.1 576,892 + -0.7 576,892 + -1.0 576,892 + -0.4 576,893 - -1.4 576,893 - -1.5 576,915 + -1.5 576,916 - -1.9 576,919 + -1.9 577,057 + thiB LU632_RS02835 0.14 -1.3 577,058 - thiB LU632_RS02835 0.14 -1.9 577,176 + thiB LU632_RS02835 0.26 -1.7 577,177 - thiB LU632_RS02835 0.26 -1.4 577,177 - thiB LU632_RS02835 0.26 -1.5 577,201 - thiB LU632_RS02835 0.29 +0.1 577,241 - thiB LU632_RS02835 0.33 +0.9 577,256 + thiB LU632_RS02835 0.34 -2.2 577,256 + thiB LU632_RS02835 0.34 -2.0 577,256 + thiB LU632_RS02835 0.34 -0.9 577,257 - thiB LU632_RS02835 0.34 -1.9 577,258 + thiB LU632_RS02835 0.34 -1.1 577,258 + thiB LU632_RS02835 0.34 -0.1 577,258 + thiB LU632_RS02835 0.34 -1.1 577,258 + thiB LU632_RS02835 0.34 -1.6 577,259 - thiB LU632_RS02835 0.35 -1.1 577,300 + thiB LU632_RS02835 0.39 +0.5 577,511 + thiB LU632_RS02835 0.60 -0.0 577,511 + thiB LU632_RS02835 0.60 -2.0 577,511 + thiB LU632_RS02835 0.60 -2.3 577,516 + thiB LU632_RS02835 0.61 +1.2 577,516 + thiB LU632_RS02835 0.61 -1.8 577,516 + thiB LU632_RS02835 0.61 +0.3 577,517 - thiB LU632_RS02835 0.61 -1.6 577,537 + thiB LU632_RS02835 0.63 -1.3 577,741 + thiB LU632_RS02835 0.83 -2.9 577,741 + thiB LU632_RS02835 0.83 -0.1 577,822 + -1.2 577,823 - -1.7 577,823 - +0.9 577,823 - -3.4 577,823 - -1.1 577,823 - -1.6 577,829 - -1.3
Or see this region's nucleotide sequence