Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02455 and LU632_RS02460 overlap by 19 nucleotides LU632_RS02460 and LU632_RS02465 are separated by 276 nucleotides LU632_RS02465 and LU632_RS02470 are separated by 141 nucleotides LU632_RS02470 and prfC are separated by 222 nucleotides
LU632_RS02455: LU632_RS02455 - DDE-type integrase/transposase/recombinase, at 488,634 to 488,976
_RS02455
LU632_RS02460: LU632_RS02460 - IS481 family transposase, at 488,958 to 489,500
_RS02460
LU632_RS02465: LU632_RS02465 - IS256 family transposase, at 489,777 to 490,985
_RS02465
LU632_RS02470: LU632_RS02470 - DinI family protein, at 491,127 to 491,377
_RS02470
LU632_RS02475: prfC - peptide chain release factor 3, at 491,600 to 493,189
prfC
Position (kb) 489
490
491 Strain fitness (log2 ratio) -2
-1
0
1
2 at 488.833 kb on - strand, within LU632_RS02455 at 488.872 kb on + strand, within LU632_RS02455 at 488.872 kb on + strand, within LU632_RS02455 at 488.872 kb on + strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 489.055 kb on - strand, within LU632_RS02460 at 489.055 kb on - strand, within LU632_RS02460 at 489.055 kb on - strand, within LU632_RS02460 at 489.055 kb on - strand, within LU632_RS02460 at 489.138 kb on + strand, within LU632_RS02460 at 489.247 kb on - strand, within LU632_RS02460 at 489.248 kb on + strand, within LU632_RS02460 at 489.248 kb on + strand, within LU632_RS02460 at 489.249 kb on - strand, within LU632_RS02460 at 489.285 kb on - strand, within LU632_RS02460 at 489.360 kb on + strand, within LU632_RS02460 at 489.506 kb on + strand at 489.507 kb on - strand at 489.525 kb on + strand at 489.527 kb on + strand at 489.527 kb on + strand at 489.527 kb on + strand at 489.527 kb on + strand at 489.528 kb on - strand at 489.528 kb on - strand at 489.693 kb on + strand at 489.693 kb on + strand at 489.764 kb on - strand at 490.446 kb on - strand, within LU632_RS02465 at 491.035 kb on + strand at 491.105 kb on - strand at 491.105 kb on - strand at 491.133 kb on - strand at 491.134 kb on + strand at 491.151 kb on - strand at 491.185 kb on + strand, within LU632_RS02470 at 491.185 kb on + strand, within LU632_RS02470 at 491.185 kb on + strand, within LU632_RS02470 at 491.263 kb on + strand, within LU632_RS02470 at 491.263 kb on + strand, within LU632_RS02470 at 491.264 kb on - strand, within LU632_RS02470 at 491.264 kb on - strand, within LU632_RS02470 at 491.264 kb on - strand, within LU632_RS02470 at 491.264 kb on - strand, within LU632_RS02470 at 491.335 kb on + strand, within LU632_RS02470 at 491.377 kb on + strand at 491.378 kb on - strand at 491.481 kb on - strand at 491.485 kb on + strand at 491.539 kb on + strand at 491.539 kb on + strand at 491.539 kb on + strand at 491.539 kb on - strand at 491.540 kb on - strand at 491.540 kb on - strand at 491.540 kb on - strand at 491.573 kb on + strand at 491.583 kb on + strand at 491.583 kb on + strand at 491.584 kb on - strand at 491.594 kb on + strand at 491.595 kb on - strand at 491.716 kb on + strand at 491.893 kb on + strand, within prfC at 491.893 kb on + strand, within prfC at 491.894 kb on - strand, within prfC at 491.894 kb on - strand, within prfC
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 488,833 - LU632_RS02455 0.58 -0.2 488,872 + LU632_RS02455 0.69 -0.1 488,872 + LU632_RS02455 0.69 -0.2 488,872 + LU632_RS02455 0.69 -0.1 488,873 - LU632_RS02455 0.70 +0.1 488,873 - LU632_RS02455 0.70 +1.3 488,873 - LU632_RS02455 0.70 -0.2 488,873 - LU632_RS02455 0.70 -0.4 488,873 - LU632_RS02455 0.70 +0.3 489,055 - LU632_RS02460 0.18 +0.1 489,055 - LU632_RS02460 0.18 -0.5 489,055 - LU632_RS02460 0.18 +0.6 489,055 - LU632_RS02460 0.18 -0.5 489,138 + LU632_RS02460 0.33 +0.7 489,247 - LU632_RS02460 0.53 -0.4 489,248 + LU632_RS02460 0.53 +0.7 489,248 + LU632_RS02460 0.53 +0.9 489,249 - LU632_RS02460 0.54 +0.2 489,285 - LU632_RS02460 0.60 -0.0 489,360 + LU632_RS02460 0.74 +0.2 489,506 + -0.1 489,507 - -0.3 489,525 + -0.3 489,527 + +0.0 489,527 + +0.1 489,527 + +0.1 489,527 + +0.1 489,528 - +0.2 489,528 - -0.4 489,693 + +0.0 489,693 + +0.1 489,764 - -0.3 490,446 - LU632_RS02465 0.55 -1.1 491,035 + -0.1 491,105 - -0.7 491,105 - +0.5 491,133 - -0.2 491,134 + +0.3 491,151 - -0.1 491,185 + LU632_RS02470 0.23 -0.3 491,185 + LU632_RS02470 0.23 +0.3 491,185 + LU632_RS02470 0.23 +0.3 491,263 + LU632_RS02470 0.54 +0.5 491,263 + LU632_RS02470 0.54 +0.0 491,264 - LU632_RS02470 0.55 +0.9 491,264 - LU632_RS02470 0.55 +0.4 491,264 - LU632_RS02470 0.55 -0.9 491,264 - LU632_RS02470 0.55 +0.9 491,335 + LU632_RS02470 0.83 -0.2 491,377 + -0.4 491,378 - -0.5 491,481 - -0.2 491,485 + -0.3 491,539 + -0.1 491,539 + +0.5 491,539 + +0.0 491,539 - +2.4 491,540 - -0.2 491,540 - +0.7 491,540 - -0.3 491,573 + +0.3 491,583 + -1.3 491,583 + -0.1 491,584 - -0.1 491,594 + -0.6 491,595 - +0.9 491,716 + -1.9 491,893 + prfC LU632_RS02475 0.18 -0.4 491,893 + prfC LU632_RS02475 0.18 +0.3 491,894 - prfC LU632_RS02475 0.18 -1.1 491,894 - prfC LU632_RS02475 0.18 -0.1
Or see this region's nucleotide sequence