Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02445

Experiment: CucXylem

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS02435 and LU632_RS02440 overlap by 8 nucleotidesLU632_RS02440 and LU632_RS02445 overlap by 8 nucleotidesLU632_RS02445 and LU632_RS02450 are separated by 56 nucleotidesLU632_RS02450 and LU632_RS02455 are separated by 53 nucleotidesLU632_RS02455 and LU632_RS02460 overlap by 19 nucleotides LU632_RS02435: LU632_RS02435 - ABC transporter substrate-binding protein, at 485,766 to 486,785 _RS02435 LU632_RS02440: LU632_RS02440 - ABC transporter ATP-binding protein, at 486,778 to 487,590 _RS02440 LU632_RS02445: LU632_RS02445 - ABC transporter permease, at 487,583 to 488,419 _RS02445 LU632_RS02450: LU632_RS02450 - hypothetical protein, at 488,476 to 488,580 _RS02450 LU632_RS02455: LU632_RS02455 - DDE-type integrase/transposase/recombinase, at 488,634 to 488,976 _RS02455 LU632_RS02460: LU632_RS02460 - IS481 family transposase, at 488,958 to 489,500 _RS02460 Position (kb) 487 488 489Strain fitness (log2 ratio) -2 -1 0 1 2at 486.618 kb on - strand, within LU632_RS02435at 486.618 kb on - strand, within LU632_RS02435at 486.625 kb on + strand, within LU632_RS02435at 486.625 kb on + strand, within LU632_RS02435at 486.625 kb on + strand, within LU632_RS02435at 486.625 kb on + strand, within LU632_RS02435at 486.625 kb on + strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.635 kb on + strand, within LU632_RS02435at 486.635 kb on + strand, within LU632_RS02435at 486.635 kb on + strand, within LU632_RS02435at 486.635 kb on + strand, within LU632_RS02435at 486.636 kb on - strand, within LU632_RS02435at 486.656 kb on + strand, within LU632_RS02435at 486.791 kb on + strandat 486.792 kb on - strandat 486.814 kb on + strandat 486.814 kb on + strandat 486.815 kb on - strandat 486.854 kb on + strandat 486.854 kb on + strandat 486.925 kb on - strand, within LU632_RS02440at 487.012 kb on - strand, within LU632_RS02440at 487.012 kb on - strand, within LU632_RS02440at 487.012 kb on - strand, within LU632_RS02440at 487.027 kb on + strand, within LU632_RS02440at 487.030 kb on - strand, within LU632_RS02440at 487.030 kb on - strand, within LU632_RS02440at 487.047 kb on - strand, within LU632_RS02440at 487.160 kb on + strand, within LU632_RS02440at 487.177 kb on + strand, within LU632_RS02440at 487.178 kb on - strand, within LU632_RS02440at 487.325 kb on + strand, within LU632_RS02440at 487.352 kb on + strand, within LU632_RS02440at 487.353 kb on - strand, within LU632_RS02440at 487.353 kb on - strand, within LU632_RS02440at 487.353 kb on - strand, within LU632_RS02440at 487.439 kb on + strand, within LU632_RS02440at 487.439 kb on + strand, within LU632_RS02440at 487.479 kb on - strand, within LU632_RS02440at 487.514 kb on + strandat 487.515 kb on - strandat 487.515 kb on - strandat 487.518 kb on + strandat 487.518 kb on + strandat 487.518 kb on + strandat 487.518 kb on + strandat 487.518 kb on + strandat 487.519 kb on - strandat 487.519 kb on - strandat 487.536 kb on - strandat 487.551 kb on - strandat 487.569 kb on + strandat 487.569 kb on + strandat 487.569 kb on + strandat 487.624 kb on - strandat 487.946 kb on + strand, within LU632_RS02445at 487.947 kb on - strand, within LU632_RS02445at 487.999 kb on + strand, within LU632_RS02445at 488.000 kb on - strand, within LU632_RS02445at 488.000 kb on - strand, within LU632_RS02445at 488.000 kb on - strand, within LU632_RS02445at 488.077 kb on - strand, within LU632_RS02445at 488.077 kb on - strand, within LU632_RS02445at 488.099 kb on - strand, within LU632_RS02445at 488.166 kb on - strand, within LU632_RS02445at 488.166 kb on - strand, within LU632_RS02445at 488.206 kb on + strand, within LU632_RS02445at 488.206 kb on + strand, within LU632_RS02445at 488.207 kb on - strand, within LU632_RS02445at 488.207 kb on - strand, within LU632_RS02445at 488.207 kb on - strand, within LU632_RS02445at 488.249 kb on + strand, within LU632_RS02445at 488.250 kb on - strand, within LU632_RS02445at 488.277 kb on - strand, within LU632_RS02445at 488.277 kb on - strand, within LU632_RS02445at 488.280 kb on + strand, within LU632_RS02445at 488.280 kb on + strand, within LU632_RS02445at 488.315 kb on - strand, within LU632_RS02445at 488.315 kb on - strand, within LU632_RS02445at 488.337 kb on + strandat 488.337 kb on + strandat 488.338 kb on - strandat 488.359 kb on - strandat 488.361 kb on + strandat 488.378 kb on - strandat 488.398 kb on + strandat 488.398 kb on + strandat 488.398 kb on + strandat 488.477 kb on + strandat 488.528 kb on + strand, within LU632_RS02450at 488.550 kb on + strand, within LU632_RS02450at 488.670 kb on + strand, within LU632_RS02455at 488.681 kb on + strand, within LU632_RS02455at 488.684 kb on + strand, within LU632_RS02455at 488.833 kb on - strand, within LU632_RS02455at 488.872 kb on + strand, within LU632_RS02455at 488.872 kb on + strand, within LU632_RS02455at 488.872 kb on + strand, within LU632_RS02455at 488.873 kb on - strand, within LU632_RS02455at 488.873 kb on - strand, within LU632_RS02455at 488.873 kb on - strand, within LU632_RS02455at 488.873 kb on - strand, within LU632_RS02455at 488.873 kb on - strand, within LU632_RS02455at 489.055 kb on - strand, within LU632_RS02460at 489.055 kb on - strand, within LU632_RS02460at 489.055 kb on - strand, within LU632_RS02460at 489.055 kb on - strand, within LU632_RS02460at 489.138 kb on + strand, within LU632_RS02460at 489.247 kb on - strand, within LU632_RS02460at 489.248 kb on + strand, within LU632_RS02460at 489.248 kb on + strand, within LU632_RS02460at 489.249 kb on - strand, within LU632_RS02460at 489.285 kb on - strand, within LU632_RS02460at 489.360 kb on + strand, within LU632_RS02460

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
remove
486,618 - LU632_RS02435 0.84 +1.1
486,618 - LU632_RS02435 0.84 +0.6
486,625 + LU632_RS02435 0.84 -0.7
486,625 + LU632_RS02435 0.84 +0.4
486,625 + LU632_RS02435 0.84 +0.8
486,625 + LU632_RS02435 0.84 +0.3
486,625 + LU632_RS02435 0.84 +0.5
486,626 - LU632_RS02435 0.84 +0.0
486,626 - LU632_RS02435 0.84 +0.9
486,626 - LU632_RS02435 0.84 -0.1
486,626 - LU632_RS02435 0.84 -0.0
486,626 - LU632_RS02435 0.84 +0.1
486,626 - LU632_RS02435 0.84 -0.2
486,626 - LU632_RS02435 0.84 -0.8
486,626 - LU632_RS02435 0.84 -1.4
486,635 + LU632_RS02435 0.85 +0.0
486,635 + LU632_RS02435 0.85 -0.4
486,635 + LU632_RS02435 0.85 +0.4
486,635 + LU632_RS02435 0.85 -0.4
486,636 - LU632_RS02435 0.85 +0.7
486,656 + LU632_RS02435 0.87 +0.3
486,791 + +0.2
486,792 - +0.7
486,814 + +0.2
486,814 + -0.3
486,815 - -0.4
486,854 + -0.1
486,854 + +0.0
486,925 - LU632_RS02440 0.18 -0.9
487,012 - LU632_RS02440 0.29 +0.7
487,012 - LU632_RS02440 0.29 -0.2
487,012 - LU632_RS02440 0.29 +1.9
487,027 + LU632_RS02440 0.31 -0.9
487,030 - LU632_RS02440 0.31 +0.1
487,030 - LU632_RS02440 0.31 -0.3
487,047 - LU632_RS02440 0.33 -0.2
487,160 + LU632_RS02440 0.47 -0.7
487,177 + LU632_RS02440 0.49 -0.1
487,178 - LU632_RS02440 0.49 +1.1
487,325 + LU632_RS02440 0.67 +0.6
487,352 + LU632_RS02440 0.71 +0.2
487,353 - LU632_RS02440 0.71 +0.8
487,353 - LU632_RS02440 0.71 -0.1
487,353 - LU632_RS02440 0.71 +0.4
487,439 + LU632_RS02440 0.81 -0.0
487,439 + LU632_RS02440 0.81 -0.6
487,479 - LU632_RS02440 0.86 -0.4
487,514 + -0.3
487,515 - -0.1
487,515 - -0.1
487,518 + -1.0
487,518 + -0.2
487,518 + -0.9
487,518 + -0.2
487,518 + -0.6
487,519 - +0.4
487,519 - +0.4
487,536 - -0.1
487,551 - -0.2
487,569 + -0.3
487,569 + +0.6
487,569 + -0.1
487,624 - -1.9
487,946 + LU632_RS02445 0.43 +0.1
487,947 - LU632_RS02445 0.43 +0.9
487,999 + LU632_RS02445 0.50 -1.9
488,000 - LU632_RS02445 0.50 -0.3
488,000 - LU632_RS02445 0.50 +1.5
488,000 - LU632_RS02445 0.50 +0.2
488,077 - LU632_RS02445 0.59 +0.2
488,077 - LU632_RS02445 0.59 -1.0
488,099 - LU632_RS02445 0.62 +0.5
488,166 - LU632_RS02445 0.70 -1.0
488,166 - LU632_RS02445 0.70 -0.3
488,206 + LU632_RS02445 0.74 +0.9
488,206 + LU632_RS02445 0.74 +0.1
488,207 - LU632_RS02445 0.75 +1.0
488,207 - LU632_RS02445 0.75 +1.9
488,207 - LU632_RS02445 0.75 -0.5
488,249 + LU632_RS02445 0.80 -0.4
488,250 - LU632_RS02445 0.80 +0.4
488,277 - LU632_RS02445 0.83 -0.0
488,277 - LU632_RS02445 0.83 +0.2
488,280 + LU632_RS02445 0.83 +0.2
488,280 + LU632_RS02445 0.83 +1.1
488,315 - LU632_RS02445 0.87 -0.1
488,315 - LU632_RS02445 0.87 -0.6
488,337 + -0.3
488,337 + +0.2
488,338 - +0.4
488,359 - +0.7
488,361 + -0.3
488,378 - +0.9
488,398 + +0.5
488,398 + -0.5
488,398 + +1.1
488,477 + -0.1
488,528 + LU632_RS02450 0.50 -0.3
488,550 + LU632_RS02450 0.70 +0.9
488,670 + LU632_RS02455 0.10 +0.6
488,681 + LU632_RS02455 0.14 +0.4
488,684 + LU632_RS02455 0.15 -0.1
488,833 - LU632_RS02455 0.58 -0.2
488,872 + LU632_RS02455 0.69 -0.1
488,872 + LU632_RS02455 0.69 -0.2
488,872 + LU632_RS02455 0.69 -0.1
488,873 - LU632_RS02455 0.70 +0.1
488,873 - LU632_RS02455 0.70 +1.3
488,873 - LU632_RS02455 0.70 -0.2
488,873 - LU632_RS02455 0.70 -0.4
488,873 - LU632_RS02455 0.70 +0.3
489,055 - LU632_RS02460 0.18 +0.1
489,055 - LU632_RS02460 0.18 -0.5
489,055 - LU632_RS02460 0.18 +0.6
489,055 - LU632_RS02460 0.18 -0.5
489,138 + LU632_RS02460 0.33 +0.7
489,247 - LU632_RS02460 0.53 -0.4
489,248 + LU632_RS02460 0.53 +0.7
489,248 + LU632_RS02460 0.53 +0.9
489,249 - LU632_RS02460 0.54 +0.2
489,285 - LU632_RS02460 0.60 -0.0
489,360 + LU632_RS02460 0.74 +0.2

Or see this region's nucleotide sequence