Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01500 and LU632_RS01505 overlap by 32 nucleotides LU632_RS01505 and LU632_RS01510 are separated by 743 nucleotides LU632_RS01510 and LU632_RS01515 are separated by 81 nucleotides LU632_RS01515 and LU632_RS01520 overlap by 4 nucleotides
LU632_RS01500: LU632_RS01500 - hypothetical protein, at 305,326 to 305,508
_RS01500
LU632_RS01505: LU632_RS01505 - hypothetical protein, at 305,477 to 305,716
_RS01505
LU632_RS01510: LU632_RS01510 - hypothetical protein, at 306,460 to 306,852
_RS01510
LU632_RS01515: LU632_RS01515 - 3'-5' exoribonuclease, at 306,934 to 307,494
_RS01515
LU632_RS01520: LU632_RS01520 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 307,491 to 308,333
_RS01520
Position (kb) 306
307 Strain fitness (log2 ratio) -1
0
1
2
3 at 305.525 kb on + strand, within LU632_RS01505 at 305.567 kb on + strand, within LU632_RS01505 at 305.749 kb on - strand at 305.755 kb on - strand at 305.755 kb on - strand at 305.780 kb on - strand at 305.857 kb on - strand at 305.910 kb on - strand at 306.107 kb on - strand at 306.107 kb on - strand at 306.315 kb on - strand at 306.412 kb on + strand at 306.413 kb on - strand at 306.413 kb on - strand at 306.417 kb on - strand at 306.454 kb on - strand at 306.478 kb on - strand at 306.500 kb on + strand, within LU632_RS01510 at 306.500 kb on + strand, within LU632_RS01510 at 306.501 kb on - strand, within LU632_RS01510 at 306.851 kb on - strand at 306.933 kb on - strand at 306.933 kb on - strand at 306.933 kb on - strand at 306.942 kb on + strand at 307.008 kb on + strand, within LU632_RS01515 at 307.009 kb on - strand, within LU632_RS01515 at 307.045 kb on - strand, within LU632_RS01515 at 307.110 kb on + strand, within LU632_RS01515 at 307.128 kb on - strand, within LU632_RS01515 at 307.170 kb on - strand, within LU632_RS01515 at 307.170 kb on - strand, within LU632_RS01515 at 307.185 kb on - strand, within LU632_RS01515 at 307.188 kb on + strand, within LU632_RS01515 at 307.188 kb on + strand, within LU632_RS01515 at 307.189 kb on - strand, within LU632_RS01515 at 307.189 kb on - strand, within LU632_RS01515 at 307.249 kb on + strand, within LU632_RS01515 at 307.249 kb on + strand, within LU632_RS01515 at 307.254 kb on + strand, within LU632_RS01515 at 307.264 kb on - strand, within LU632_RS01515 at 307.264 kb on - strand, within LU632_RS01515 at 307.268 kb on - strand, within LU632_RS01515 at 307.268 kb on - strand, within LU632_RS01515 at 307.354 kb on - strand, within LU632_RS01515 at 307.354 kb on - strand, within LU632_RS01515 at 307.402 kb on - strand, within LU632_RS01515 at 307.538 kb on - strand at 307.546 kb on + strand at 307.546 kb on + strand at 307.554 kb on + strand at 307.555 kb on - strand at 307.632 kb on + strand, within LU632_RS01520 at 307.752 kb on + strand, within LU632_RS01520 at 307.753 kb on - strand, within LU632_RS01520 at 307.771 kb on + strand, within LU632_RS01520 at 307.803 kb on + strand, within LU632_RS01520 at 307.803 kb on + strand, within LU632_RS01520
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 305,525 + LU632_RS01505 0.20 -0.4 305,567 + LU632_RS01505 0.38 +0.6 305,749 - -1.0 305,755 - -0.2 305,755 - -1.1 305,780 - -0.5 305,857 - -0.2 305,910 - +0.1 306,107 - +0.2 306,107 - -0.1 306,315 - +1.4 306,412 + -0.7 306,413 - +0.4 306,413 - -0.2 306,417 - -0.5 306,454 - +0.5 306,478 - +0.2 306,500 + LU632_RS01510 0.10 +0.7 306,500 + LU632_RS01510 0.10 +0.1 306,501 - LU632_RS01510 0.10 +0.6 306,851 - -0.1 306,933 - -0.8 306,933 - +0.3 306,933 - +0.4 306,942 + -1.3 307,008 + LU632_RS01515 0.13 +0.1 307,009 - LU632_RS01515 0.13 -0.1 307,045 - LU632_RS01515 0.20 -0.4 307,110 + LU632_RS01515 0.31 +0.4 307,128 - LU632_RS01515 0.35 -0.2 307,170 - LU632_RS01515 0.42 -0.7 307,170 - LU632_RS01515 0.42 +0.5 307,185 - LU632_RS01515 0.45 -1.1 307,188 + LU632_RS01515 0.45 -0.3 307,188 + LU632_RS01515 0.45 -0.4 307,189 - LU632_RS01515 0.45 +0.3 307,189 - LU632_RS01515 0.45 -0.4 307,249 + LU632_RS01515 0.56 -0.6 307,249 + LU632_RS01515 0.56 +0.5 307,254 + LU632_RS01515 0.57 -0.0 307,264 - LU632_RS01515 0.59 -0.9 307,264 - LU632_RS01515 0.59 -0.5 307,268 - LU632_RS01515 0.60 +1.1 307,268 - LU632_RS01515 0.60 -0.4 307,354 - LU632_RS01515 0.75 -0.7 307,354 - LU632_RS01515 0.75 +2.9 307,402 - LU632_RS01515 0.83 +1.1 307,538 - -0.7 307,546 + +0.2 307,546 + -0.5 307,554 + -1.4 307,555 - +0.5 307,632 + LU632_RS01520 0.17 +0.9 307,752 + LU632_RS01520 0.31 +1.3 307,753 - LU632_RS01520 0.31 -0.8 307,771 + LU632_RS01520 0.33 -0.0 307,803 + LU632_RS01520 0.37 +0.9 307,803 + LU632_RS01520 0.37 +0.5
Or see this region's nucleotide sequence