Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00840

Experiment: CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00835 and zinT are separated by 76 nucleotideszinT and LU632_RS00845 are separated by 181 nucleotides LU632_RS00835: LU632_RS00835 - DeoR/GlpR family DNA-binding transcription regulator, at 181,888 to 182,664 _RS00835 LU632_RS00840: zinT - metal-binding protein ZinT, at 182,741 to 183,388 zinT LU632_RS00845: LU632_RS00845 - ABC transporter ATP-binding protein/permease, at 183,570 to 185,403 _RS00845 Position (kb) 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 181.824 kb on + strandat 181.844 kb on + strandat 181.955 kb on + strandat 181.956 kb on - strandat 182.012 kb on + strand, within LU632_RS00835at 182.054 kb on + strand, within LU632_RS00835at 182.055 kb on - strand, within LU632_RS00835at 182.081 kb on - strand, within LU632_RS00835at 182.095 kb on + strand, within LU632_RS00835at 182.095 kb on + strand, within LU632_RS00835at 182.095 kb on + strand, within LU632_RS00835at 182.096 kb on - strand, within LU632_RS00835at 182.096 kb on - strand, within LU632_RS00835at 182.116 kb on - strand, within LU632_RS00835at 182.250 kb on - strand, within LU632_RS00835at 182.322 kb on + strand, within LU632_RS00835at 182.322 kb on + strand, within LU632_RS00835at 182.322 kb on + strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.339 kb on - strand, within LU632_RS00835at 182.339 kb on - strand, within LU632_RS00835at 182.339 kb on - strand, within LU632_RS00835at 182.367 kb on + strand, within LU632_RS00835at 182.417 kb on + strand, within LU632_RS00835at 182.448 kb on + strand, within LU632_RS00835at 182.493 kb on + strand, within LU632_RS00835at 182.565 kb on + strand, within LU632_RS00835at 182.577 kb on + strand, within LU632_RS00835at 182.577 kb on + strand, within LU632_RS00835at 182.617 kb on + strandat 182.692 kb on + strandat 182.692 kb on + strandat 182.910 kb on + strand, within zinTat 182.911 kb on - strand, within zinTat 182.979 kb on + strand, within zinTat 182.979 kb on - strand, within zinTat 182.980 kb on - strand, within zinTat 183.003 kb on + strand, within zinTat 183.004 kb on - strand, within zinTat 183.004 kb on - strand, within zinTat 183.010 kb on - strand, within zinTat 183.068 kb on - strand, within zinTat 183.074 kb on - strand, within zinTat 183.102 kb on + strand, within zinTat 183.102 kb on + strand, within zinTat 183.106 kb on - strand, within zinTat 183.182 kb on + strand, within zinTat 183.183 kb on - strand, within zinTat 183.187 kb on - strand, within zinTat 183.193 kb on + strand, within zinTat 183.449 kb on + strandat 183.451 kb on + strandat 183.452 kb on - strandat 183.504 kb on + strandat 183.637 kb on - strandat 183.656 kb on - strandat 183.665 kb on - strandat 183.698 kb on + strandat 183.698 kb on + strandat 183.728 kb on + strandat 183.729 kb on - strandat 183.729 kb on - strandat 183.734 kb on + strandat 183.774 kb on - strand, within LU632_RS00845at 183.938 kb on + strand, within LU632_RS00845at 183.939 kb on - strand, within LU632_RS00845at 183.942 kb on + strand, within LU632_RS00845at 183.942 kb on + strand, within LU632_RS00845at 183.942 kb on + strand, within LU632_RS00845at 183.942 kb on + strand, within LU632_RS00845at 183.943 kb on - strand, within LU632_RS00845at 183.943 kb on - strand, within LU632_RS00845at 183.943 kb on - strand, within LU632_RS00845at 183.943 kb on - strand, within LU632_RS00845at 183.943 kb on - strand, within LU632_RS00845at 184.078 kb on - strand, within LU632_RS00845at 184.086 kb on - strand, within LU632_RS00845at 184.093 kb on + strand, within LU632_RS00845at 184.094 kb on - strand, within LU632_RS00845at 184.094 kb on - strand, within LU632_RS00845at 184.180 kb on + strand, within LU632_RS00845at 184.181 kb on - strand, within LU632_RS00845at 184.189 kb on + strand, within LU632_RS00845at 184.309 kb on - strand, within LU632_RS00845

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Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
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181,824 + +0.4
181,844 + -0.2
181,955 + +0.1
181,956 - +0.6
182,012 + LU632_RS00835 0.16 -0.5
182,054 + LU632_RS00835 0.21 +0.0
182,055 - LU632_RS00835 0.21 -0.6
182,081 - LU632_RS00835 0.25 -0.6
182,095 + LU632_RS00835 0.27 -0.0
182,095 + LU632_RS00835 0.27 +0.3
182,095 + LU632_RS00835 0.27 -0.6
182,096 - LU632_RS00835 0.27 -0.9
182,096 - LU632_RS00835 0.27 +0.4
182,116 - LU632_RS00835 0.29 +2.1
182,250 - LU632_RS00835 0.47 -0.5
182,322 + LU632_RS00835 0.56 +0.7
182,322 + LU632_RS00835 0.56 -0.6
182,322 + LU632_RS00835 0.56 -0.3
182,323 - LU632_RS00835 0.56 -1.9
182,323 - LU632_RS00835 0.56 +0.0
182,323 - LU632_RS00835 0.56 -0.0
182,323 - LU632_RS00835 0.56 +1.7
182,339 - LU632_RS00835 0.58 -0.9
182,339 - LU632_RS00835 0.58 -1.2
182,339 - LU632_RS00835 0.58 +0.2
182,367 + LU632_RS00835 0.62 -0.0
182,417 + LU632_RS00835 0.68 -0.3
182,448 + LU632_RS00835 0.72 -0.5
182,493 + LU632_RS00835 0.78 +0.4
182,565 + LU632_RS00835 0.87 -1.1
182,577 + LU632_RS00835 0.89 -0.8
182,577 + LU632_RS00835 0.89 -1.1
182,617 + -0.9
182,692 + -0.4
182,692 + -0.7
182,910 + zinT LU632_RS00840 0.26 +0.2
182,911 - zinT LU632_RS00840 0.26 +0.7
182,979 + zinT LU632_RS00840 0.37 -0.1
182,979 - zinT LU632_RS00840 0.37 -0.2
182,980 - zinT LU632_RS00840 0.37 +2.4
183,003 + zinT LU632_RS00840 0.40 +0.6
183,004 - zinT LU632_RS00840 0.41 +0.2
183,004 - zinT LU632_RS00840 0.41 -0.4
183,010 - zinT LU632_RS00840 0.42 -0.1
183,068 - zinT LU632_RS00840 0.50 +0.3
183,074 - zinT LU632_RS00840 0.51 -2.8
183,102 + zinT LU632_RS00840 0.56 -0.1
183,102 + zinT LU632_RS00840 0.56 -1.8
183,106 - zinT LU632_RS00840 0.56 +1.1
183,182 + zinT LU632_RS00840 0.68 +0.0
183,183 - zinT LU632_RS00840 0.68 +0.3
183,187 - zinT LU632_RS00840 0.69 -0.3
183,193 + zinT LU632_RS00840 0.70 -0.1
183,449 + +0.5
183,451 + -0.2
183,452 - +0.2
183,504 + -0.6
183,637 - +0.4
183,656 - +0.1
183,665 - -0.5
183,698 + -0.8
183,698 + +0.4
183,728 + +0.0
183,729 - -0.1
183,729 - +0.7
183,734 + +0.2
183,774 - LU632_RS00845 0.11 -0.2
183,938 + LU632_RS00845 0.20 +0.5
183,939 - LU632_RS00845 0.20 +1.4
183,942 + LU632_RS00845 0.20 +0.4
183,942 + LU632_RS00845 0.20 -0.3
183,942 + LU632_RS00845 0.20 +0.4
183,942 + LU632_RS00845 0.20 +0.3
183,943 - LU632_RS00845 0.20 +0.2
183,943 - LU632_RS00845 0.20 +0.6
183,943 - LU632_RS00845 0.20 -0.0
183,943 - LU632_RS00845 0.20 -0.2
183,943 - LU632_RS00845 0.20 -0.1
184,078 - LU632_RS00845 0.28 -1.1
184,086 - LU632_RS00845 0.28 -1.1
184,093 + LU632_RS00845 0.29 +0.6
184,094 - LU632_RS00845 0.29 -0.1
184,094 - LU632_RS00845 0.29 -0.1
184,180 + LU632_RS00845 0.33 -1.1
184,181 - LU632_RS00845 0.33 -0.1
184,189 + LU632_RS00845 0.34 +1.2
184,309 - LU632_RS00845 0.40 -0.1

Or see this region's nucleotide sequence