Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00825

Experiment: CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00820 and LU632_RS00825 are separated by 210 nucleotidesLU632_RS00825 and LU632_RS00830 overlap by 4 nucleotides LU632_RS00820: LU632_RS00820 - extracellular solute-binding protein, at 178,270 to 179,520 _RS00820 LU632_RS00825: LU632_RS00825 - ROK family protein, at 179,731 to 180,672 _RS00825 LU632_RS00830: LU632_RS00830 - SIS domain-containing protein, at 180,669 to 181,694 _RS00830 Position (kb) 179 180 181Strain fitness (log2 ratio) -1 0 1at 178.781 kb on + strand, within LU632_RS00820at 178.782 kb on - strand, within LU632_RS00820at 178.922 kb on + strand, within LU632_RS00820at 178.923 kb on - strand, within LU632_RS00820at 179.075 kb on + strand, within LU632_RS00820at 179.076 kb on - strand, within LU632_RS00820at 179.076 kb on - strand, within LU632_RS00820at 179.085 kb on - strand, within LU632_RS00820at 179.089 kb on - strand, within LU632_RS00820at 179.239 kb on - strand, within LU632_RS00820at 179.446 kb on + strandat 179.447 kb on - strandat 179.482 kb on + strandat 179.486 kb on + strandat 179.487 kb on - strandat 179.536 kb on + strandat 179.635 kb on - strandat 179.639 kb on - strandat 179.640 kb on + strandat 179.641 kb on - strandat 179.664 kb on + strandat 179.665 kb on - strandat 179.665 kb on - strandat 179.665 kb on - strandat 179.718 kb on + strandat 179.718 kb on + strandat 179.719 kb on - strandat 179.719 kb on - strandat 179.719 kb on - strandat 179.722 kb on + strandat 179.911 kb on + strand, within LU632_RS00825at 179.911 kb on + strand, within LU632_RS00825at 179.911 kb on + strand, within LU632_RS00825at 179.911 kb on + strand, within LU632_RS00825at 179.911 kb on + strand, within LU632_RS00825at 179.921 kb on - strand, within LU632_RS00825at 179.934 kb on - strand, within LU632_RS00825at 179.934 kb on - strand, within LU632_RS00825at 179.949 kb on + strand, within LU632_RS00825at 179.950 kb on - strand, within LU632_RS00825at 179.989 kb on + strand, within LU632_RS00825at 180.068 kb on - strand, within LU632_RS00825at 180.310 kb on + strand, within LU632_RS00825at 180.310 kb on + strand, within LU632_RS00825at 180.311 kb on - strand, within LU632_RS00825at 180.672 kb on + strandat 180.673 kb on - strandat 180.697 kb on + strandat 180.698 kb on - strandat 180.767 kb on + strandat 180.767 kb on + strandat 180.774 kb on + strand, within LU632_RS00830at 180.774 kb on + strand, within LU632_RS00830at 180.775 kb on - strand, within LU632_RS00830at 180.829 kb on + strand, within LU632_RS00830at 180.829 kb on + strand, within LU632_RS00830at 180.830 kb on - strand, within LU632_RS00830at 180.830 kb on - strand, within LU632_RS00830at 181.069 kb on - strand, within LU632_RS00830at 181.137 kb on + strand, within LU632_RS00830at 181.140 kb on - strand, within LU632_RS00830at 181.143 kb on - strand, within LU632_RS00830at 181.183 kb on + strand, within LU632_RS00830at 181.184 kb on - strand, within LU632_RS00830at 181.184 kb on - strand, within LU632_RS00830at 181.184 kb on - strand, within LU632_RS00830at 181.184 kb on - strand, within LU632_RS00830at 181.185 kb on + strand, within LU632_RS00830at 181.186 kb on - strand, within LU632_RS00830at 181.225 kb on + strand, within LU632_RS00830at 181.226 kb on - strand, within LU632_RS00830at 181.226 kb on - strand, within LU632_RS00830at 181.241 kb on + strand, within LU632_RS00830at 181.334 kb on + strand, within LU632_RS00830at 181.370 kb on + strand, within LU632_RS00830at 181.370 kb on + strand, within LU632_RS00830at 181.495 kb on - strand, within LU632_RS00830at 181.495 kb on - strand, within LU632_RS00830at 181.563 kb on + strand, within LU632_RS00830at 181.564 kb on - strand, within LU632_RS00830at 181.564 kb on - strand, within LU632_RS00830at 181.617 kb on - strandat 181.617 kb on - strandat 181.618 kb on + strandat 181.618 kb on + strandat 181.619 kb on - strandat 181.619 kb on - strandat 181.619 kb on - strandat 181.619 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
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178,781 + LU632_RS00820 0.41 -0.2
178,782 - LU632_RS00820 0.41 -0.1
178,922 + LU632_RS00820 0.52 +0.6
178,923 - LU632_RS00820 0.52 +0.2
179,075 + LU632_RS00820 0.64 +0.9
179,076 - LU632_RS00820 0.64 -0.3
179,076 - LU632_RS00820 0.64 -0.6
179,085 - LU632_RS00820 0.65 -0.0
179,089 - LU632_RS00820 0.65 +0.2
179,239 - LU632_RS00820 0.77 +0.0
179,446 + -0.3
179,447 - +0.3
179,482 + +1.1
179,486 + -0.6
179,487 - +0.3
179,536 + -1.2
179,635 - +0.2
179,639 - +0.5
179,640 + -0.9
179,641 - -0.1
179,664 + -0.1
179,665 - -0.6
179,665 - -1.4
179,665 - -1.0
179,718 + -0.1
179,718 + +0.0
179,719 - +0.6
179,719 - -0.4
179,719 - +0.2
179,722 + -0.8
179,911 + LU632_RS00825 0.19 +1.5
179,911 + LU632_RS00825 0.19 -0.0
179,911 + LU632_RS00825 0.19 +0.0
179,911 + LU632_RS00825 0.19 -0.4
179,911 + LU632_RS00825 0.19 +0.8
179,921 - LU632_RS00825 0.20 -1.4
179,934 - LU632_RS00825 0.22 -0.4
179,934 - LU632_RS00825 0.22 -0.1
179,949 + LU632_RS00825 0.23 +0.4
179,950 - LU632_RS00825 0.23 -0.1
179,989 + LU632_RS00825 0.27 +0.2
180,068 - LU632_RS00825 0.36 -1.6
180,310 + LU632_RS00825 0.61 -0.6
180,310 + LU632_RS00825 0.61 -1.6
180,311 - LU632_RS00825 0.62 -0.1
180,672 + -0.2
180,673 - +0.4
180,697 + +0.4
180,698 - +1.5
180,767 + -0.1
180,767 + -0.1
180,774 + LU632_RS00830 0.10 -0.4
180,774 + LU632_RS00830 0.10 +0.0
180,775 - LU632_RS00830 0.10 -0.8
180,829 + LU632_RS00830 0.16 +0.9
180,829 + LU632_RS00830 0.16 -0.6
180,830 - LU632_RS00830 0.16 -0.5
180,830 - LU632_RS00830 0.16 -0.1
181,069 - LU632_RS00830 0.39 -0.5
181,137 + LU632_RS00830 0.46 -1.4
181,140 - LU632_RS00830 0.46 -0.6
181,143 - LU632_RS00830 0.46 -0.4
181,183 + LU632_RS00830 0.50 +0.5
181,184 - LU632_RS00830 0.50 +0.2
181,184 - LU632_RS00830 0.50 +0.0
181,184 - LU632_RS00830 0.50 -0.4
181,184 - LU632_RS00830 0.50 -0.1
181,185 + LU632_RS00830 0.50 -0.1
181,186 - LU632_RS00830 0.50 -0.8
181,225 + LU632_RS00830 0.54 -0.2
181,226 - LU632_RS00830 0.54 +0.5
181,226 - LU632_RS00830 0.54 -1.3
181,241 + LU632_RS00830 0.56 -0.1
181,334 + LU632_RS00830 0.65 -0.6
181,370 + LU632_RS00830 0.68 +0.9
181,370 + LU632_RS00830 0.68 +0.3
181,495 - LU632_RS00830 0.81 +0.5
181,495 - LU632_RS00830 0.81 -0.3
181,563 + LU632_RS00830 0.87 -0.3
181,564 - LU632_RS00830 0.87 -0.1
181,564 - LU632_RS00830 0.87 +0.3
181,617 - -1.1
181,617 - +0.1
181,618 + -0.6
181,618 + -0.4
181,619 - +0.5
181,619 - +0.2
181,619 - -0.6
181,619 - +0.5

Or see this region's nucleotide sequence