Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00700 and LU632_RS00705 overlap by 13 nucleotides LU632_RS00705 and tssB are separated by 124 nucleotides tssB and tssC are separated by 17 nucleotides
LU632_RS00700: LU632_RS00700 - fimbrial biogenesis outer membrane usher protein, at 146,905 to 149,541
_RS00700
LU632_RS00705: LU632_RS00705 - type 1 fimbrial protein, at 149,529 to 150,110
_RS00705
LU632_RS00710: tssB - type VI secretion system contractile sheath small subunit, at 150,235 to 150,768
tssB
LU632_RS00715: tssC - type VI secretion system contractile sheath large subunit, at 150,786 to 152,285
tssC
Position (kb) 149
150
151 Strain fitness (log2 ratio) -1
0
1
2 at 148.550 kb on - strand, within LU632_RS00700 at 148.550 kb on - strand, within LU632_RS00700 at 148.648 kb on + strand, within LU632_RS00700 at 148.679 kb on - strand, within LU632_RS00700 at 148.680 kb on + strand, within LU632_RS00700 at 148.683 kb on + strand, within LU632_RS00700 at 148.684 kb on - strand, within LU632_RS00700 at 148.757 kb on - strand, within LU632_RS00700 at 148.759 kb on - strand, within LU632_RS00700 at 148.834 kb on + strand, within LU632_RS00700 at 148.889 kb on + strand, within LU632_RS00700 at 148.890 kb on - strand, within LU632_RS00700 at 148.928 kb on + strand, within LU632_RS00700 at 148.929 kb on - strand, within LU632_RS00700 at 148.929 kb on - strand, within LU632_RS00700 at 148.929 kb on - strand, within LU632_RS00700 at 148.929 kb on - strand, within LU632_RS00700 at 148.929 kb on - strand, within LU632_RS00700 at 148.932 kb on + strand, within LU632_RS00700 at 149.088 kb on - strand, within LU632_RS00700 at 149.166 kb on + strand, within LU632_RS00700 at 149.174 kb on + strand, within LU632_RS00700 at 149.174 kb on + strand, within LU632_RS00700 at 149.319 kb on - strand at 149.322 kb on + strand at 149.323 kb on - strand at 149.349 kb on + strand at 149.350 kb on - strand at 149.429 kb on + strand at 149.432 kb on - strand at 149.432 kb on - strand at 149.432 kb on - strand at 149.435 kb on + strand at 149.435 kb on + strand at 149.639 kb on - strand, within LU632_RS00705 at 149.664 kb on + strand, within LU632_RS00705 at 149.694 kb on - strand, within LU632_RS00705 at 149.787 kb on - strand, within LU632_RS00705 at 150.021 kb on + strand, within LU632_RS00705 at 150.033 kb on + strand, within LU632_RS00705 at 150.299 kb on + strand, within tssB at 150.374 kb on + strand, within tssB at 150.640 kb on + strand, within tssB at 150.640 kb on + strand, within tssB at 150.640 kb on + strand, within tssB at 150.641 kb on - strand, within tssB at 150.795 kb on - strand at 150.795 kb on - strand at 150.809 kb on + strand at 151.029 kb on - strand, within tssC at 151.104 kb on - strand, within tssC
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 148,550 - LU632_RS00700 0.62 -1.1 148,550 - LU632_RS00700 0.62 -0.1 148,648 + LU632_RS00700 0.66 -0.4 148,679 - LU632_RS00700 0.67 -0.4 148,680 + LU632_RS00700 0.67 -0.3 148,683 + LU632_RS00700 0.67 -0.5 148,684 - LU632_RS00700 0.67 +1.5 148,757 - LU632_RS00700 0.70 +0.1 148,759 - LU632_RS00700 0.70 -0.4 148,834 + LU632_RS00700 0.73 +1.3 148,889 + LU632_RS00700 0.75 +0.4 148,890 - LU632_RS00700 0.75 -0.3 148,928 + LU632_RS00700 0.77 -0.1 148,929 - LU632_RS00700 0.77 -0.1 148,929 - LU632_RS00700 0.77 +0.1 148,929 - LU632_RS00700 0.77 +0.3 148,929 - LU632_RS00700 0.77 +0.6 148,929 - LU632_RS00700 0.77 +0.2 148,932 + LU632_RS00700 0.77 -0.6 149,088 - LU632_RS00700 0.83 +0.5 149,166 + LU632_RS00700 0.86 -0.5 149,174 + LU632_RS00700 0.86 -0.4 149,174 + LU632_RS00700 0.86 +1.5 149,319 - +2.5 149,322 + +0.2 149,323 - -0.1 149,349 + +0.0 149,350 - +0.5 149,429 + +0.3 149,432 - +0.2 149,432 - -1.2 149,432 - +0.0 149,435 + -0.6 149,435 + +1.5 149,639 - LU632_RS00705 0.19 +0.1 149,664 + LU632_RS00705 0.23 -0.6 149,694 - LU632_RS00705 0.28 +0.0 149,787 - LU632_RS00705 0.44 +1.3 150,021 + LU632_RS00705 0.85 -0.5 150,033 + LU632_RS00705 0.87 -0.4 150,299 + tssB LU632_RS00710 0.12 -0.4 150,374 + tssB LU632_RS00710 0.26 +0.3 150,640 + tssB LU632_RS00710 0.76 -1.1 150,640 + tssB LU632_RS00710 0.76 +0.9 150,640 + tssB LU632_RS00710 0.76 -0.3 150,641 - tssB LU632_RS00710 0.76 +0.1 150,795 - +0.5 150,795 - -1.5 150,809 + -0.1 151,029 - tssC LU632_RS00715 0.16 +0.4 151,104 - tssC LU632_RS00715 0.21 +0.6
Or see this region's nucleotide sequence