Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00390 and LU632_RS00395 are separated by 274 nucleotides LU632_RS00395 and LU632_RS00400 are separated by 479 nucleotides
LU632_RS00390: LU632_RS00390 - sugar kinase, at 81,004 to 81,936
_RS00390
LU632_RS00395: LU632_RS00395 - AsmA family protein, at 82,211 to 84,226
_RS00395
LU632_RS00400: LU632_RS00400 - hypothetical protein, at 84,706 to 85,437
_RS00400
Position (kb) 82
83
84
85 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 81.384 kb on - strand, within LU632_RS00390 at 81.539 kb on + strand, within LU632_RS00390 at 81.539 kb on + strand, within LU632_RS00390 at 81.540 kb on - strand, within LU632_RS00390 at 81.540 kb on - strand, within LU632_RS00390 at 81.540 kb on - strand, within LU632_RS00390 at 81.545 kb on + strand, within LU632_RS00390 at 81.546 kb on - strand, within LU632_RS00390 at 81.552 kb on - strand, within LU632_RS00390 at 81.552 kb on - strand, within LU632_RS00390 at 81.558 kb on + strand, within LU632_RS00390 at 81.559 kb on - strand, within LU632_RS00390 at 81.571 kb on + strand, within LU632_RS00390 at 81.571 kb on + strand, within LU632_RS00390 at 81.671 kb on + strand, within LU632_RS00390 at 81.674 kb on - strand, within LU632_RS00390 at 81.688 kb on - strand, within LU632_RS00390 at 81.900 kb on + strand at 81.900 kb on + strand at 81.921 kb on + strand at 81.978 kb on + strand at 82.148 kb on + strand at 82.225 kb on - strand at 82.225 kb on - strand at 82.260 kb on + strand at 82.261 kb on - strand at 82.261 kb on - strand at 82.416 kb on + strand, within LU632_RS00395 at 82.471 kb on - strand, within LU632_RS00395 at 82.481 kb on + strand, within LU632_RS00395 at 82.481 kb on + strand, within LU632_RS00395 at 82.514 kb on + strand, within LU632_RS00395 at 82.514 kb on + strand, within LU632_RS00395 at 82.515 kb on - strand, within LU632_RS00395 at 82.515 kb on - strand, within LU632_RS00395 at 82.519 kb on - strand, within LU632_RS00395 at 82.581 kb on + strand, within LU632_RS00395 at 82.582 kb on - strand, within LU632_RS00395 at 82.594 kb on - strand, within LU632_RS00395 at 82.659 kb on + strand, within LU632_RS00395 at 82.662 kb on + strand, within LU632_RS00395 at 82.662 kb on + strand, within LU632_RS00395 at 82.662 kb on + strand, within LU632_RS00395 at 82.683 kb on + strand, within LU632_RS00395 at 82.684 kb on - strand, within LU632_RS00395 at 83.025 kb on + strand, within LU632_RS00395 at 83.026 kb on - strand, within LU632_RS00395 at 83.041 kb on + strand, within LU632_RS00395 at 83.056 kb on - strand, within LU632_RS00395 at 83.060 kb on + strand, within LU632_RS00395 at 83.061 kb on - strand, within LU632_RS00395 at 83.061 kb on - strand, within LU632_RS00395 at 83.080 kb on + strand, within LU632_RS00395 at 83.141 kb on - strand, within LU632_RS00395 at 83.175 kb on + strand, within LU632_RS00395 at 83.175 kb on + strand, within LU632_RS00395 at 83.175 kb on + strand, within LU632_RS00395 at 83.176 kb on - strand, within LU632_RS00395 at 83.176 kb on - strand, within LU632_RS00395 at 83.249 kb on + strand, within LU632_RS00395 at 83.250 kb on - strand, within LU632_RS00395 at 83.386 kb on - strand, within LU632_RS00395 at 83.468 kb on + strand, within LU632_RS00395 at 83.468 kb on + strand, within LU632_RS00395 at 83.468 kb on + strand, within LU632_RS00395 at 83.469 kb on - strand, within LU632_RS00395 at 83.469 kb on - strand, within LU632_RS00395 at 83.469 kb on - strand, within LU632_RS00395 at 83.469 kb on - strand, within LU632_RS00395 at 83.470 kb on + strand, within LU632_RS00395 at 83.470 kb on + strand, within LU632_RS00395 at 83.470 kb on + strand, within LU632_RS00395 at 83.470 kb on + strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.471 kb on - strand, within LU632_RS00395 at 83.474 kb on + strand, within LU632_RS00395 at 83.475 kb on - strand, within LU632_RS00395 at 83.501 kb on + strand, within LU632_RS00395 at 83.502 kb on - strand, within LU632_RS00395 at 83.502 kb on - strand, within LU632_RS00395 at 83.547 kb on + strand, within LU632_RS00395 at 83.571 kb on + strand, within LU632_RS00395 at 83.718 kb on - strand, within LU632_RS00395 at 83.815 kb on - strand, within LU632_RS00395 at 83.859 kb on + strand, within LU632_RS00395 at 83.859 kb on + strand, within LU632_RS00395 at 83.879 kb on + strand, within LU632_RS00395 at 83.879 kb on + strand, within LU632_RS00395 at 83.880 kb on - strand, within LU632_RS00395 at 83.939 kb on + strand, within LU632_RS00395 at 83.939 kb on + strand, within LU632_RS00395 at 83.942 kb on + strand, within LU632_RS00395 at 83.943 kb on - strand, within LU632_RS00395 at 83.943 kb on - strand, within LU632_RS00395 at 83.946 kb on - strand, within LU632_RS00395 at 83.957 kb on + strand, within LU632_RS00395 at 84.013 kb on + strand, within LU632_RS00395 at 84.016 kb on + strand, within LU632_RS00395 at 84.017 kb on - strand, within LU632_RS00395 at 84.038 kb on + strand at 84.038 kb on + strand at 84.039 kb on - strand at 84.172 kb on + strand at 84.174 kb on - strand at 84.256 kb on - strand at 84.310 kb on + strand at 84.310 kb on + strand at 84.310 kb on + strand at 84.310 kb on + strand at 84.311 kb on - strand at 84.311 kb on - strand at 84.327 kb on + strand at 84.327 kb on + strand at 84.327 kb on + strand at 84.328 kb on - strand at 84.487 kb on + strand at 84.494 kb on + strand at 84.495 kb on - strand at 84.531 kb on - strand at 84.556 kb on + strand at 84.603 kb on + strand at 84.605 kb on + strand at 84.680 kb on - strand at 84.900 kb on + strand, within LU632_RS00400
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 81,384 - LU632_RS00390 0.41 -1.1 81,539 + LU632_RS00390 0.57 -0.1 81,539 + LU632_RS00390 0.57 +0.1 81,540 - LU632_RS00390 0.57 -0.5 81,540 - LU632_RS00390 0.57 -0.1 81,540 - LU632_RS00390 0.57 -0.2 81,545 + LU632_RS00390 0.58 +0.3 81,546 - LU632_RS00390 0.58 -0.3 81,552 - LU632_RS00390 0.59 -0.5 81,552 - LU632_RS00390 0.59 -1.3 81,558 + LU632_RS00390 0.59 -0.3 81,559 - LU632_RS00390 0.59 -0.0 81,571 + LU632_RS00390 0.61 +0.1 81,571 + LU632_RS00390 0.61 +0.7 81,671 + LU632_RS00390 0.71 +0.7 81,674 - LU632_RS00390 0.72 +0.5 81,688 - LU632_RS00390 0.73 -1.1 81,900 + +0.3 81,900 + +0.6 81,921 + +0.4 81,978 + -0.3 82,148 + +1.2 82,225 - -0.1 82,225 - +0.2 82,260 + -0.1 82,261 - +0.2 82,261 - -0.3 82,416 + LU632_RS00395 0.10 -0.1 82,471 - LU632_RS00395 0.13 -0.4 82,481 + LU632_RS00395 0.13 +0.9 82,481 + LU632_RS00395 0.13 +0.4 82,514 + LU632_RS00395 0.15 +1.4 82,514 + LU632_RS00395 0.15 +0.7 82,515 - LU632_RS00395 0.15 -0.6 82,515 - LU632_RS00395 0.15 -0.4 82,519 - LU632_RS00395 0.15 -1.1 82,581 + LU632_RS00395 0.18 -0.4 82,582 - LU632_RS00395 0.18 -0.4 82,594 - LU632_RS00395 0.19 -3.0 82,659 + LU632_RS00395 0.22 +0.4 82,662 + LU632_RS00395 0.22 +0.5 82,662 + LU632_RS00395 0.22 -0.2 82,662 + LU632_RS00395 0.22 +0.1 82,683 + LU632_RS00395 0.23 +0.2 82,684 - LU632_RS00395 0.23 -0.1 83,025 + LU632_RS00395 0.40 -0.4 83,026 - LU632_RS00395 0.40 +0.4 83,041 + LU632_RS00395 0.41 -0.1 83,056 - LU632_RS00395 0.42 -0.2 83,060 + LU632_RS00395 0.42 -0.1 83,061 - LU632_RS00395 0.42 +0.7 83,061 - LU632_RS00395 0.42 +2.3 83,080 + LU632_RS00395 0.43 -0.1 83,141 - LU632_RS00395 0.46 -0.1 83,175 + LU632_RS00395 0.48 -0.2 83,175 + LU632_RS00395 0.48 -0.3 83,175 + LU632_RS00395 0.48 -1.4 83,176 - LU632_RS00395 0.48 -0.5 83,176 - LU632_RS00395 0.48 -1.8 83,249 + LU632_RS00395 0.51 -0.8 83,250 - LU632_RS00395 0.52 -0.5 83,386 - LU632_RS00395 0.58 +1.2 83,468 + LU632_RS00395 0.62 +0.3 83,468 + LU632_RS00395 0.62 +0.3 83,468 + LU632_RS00395 0.62 +0.4 83,469 - LU632_RS00395 0.62 -0.6 83,469 - LU632_RS00395 0.62 -0.4 83,469 - LU632_RS00395 0.62 +1.8 83,469 - LU632_RS00395 0.62 -0.2 83,470 + LU632_RS00395 0.62 -0.6 83,470 + LU632_RS00395 0.62 +0.4 83,470 + LU632_RS00395 0.62 -0.1 83,470 + LU632_RS00395 0.62 +0.8 83,471 - LU632_RS00395 0.62 +0.0 83,471 - LU632_RS00395 0.62 +1.7 83,471 - LU632_RS00395 0.62 -1.1 83,471 - LU632_RS00395 0.62 +1.5 83,471 - LU632_RS00395 0.62 +0.9 83,471 - LU632_RS00395 0.62 +0.3 83,471 - LU632_RS00395 0.62 -1.5 83,471 - LU632_RS00395 0.62 -0.8 83,471 - LU632_RS00395 0.62 -0.6 83,471 - LU632_RS00395 0.62 -0.1 83,471 - LU632_RS00395 0.62 -0.2 83,471 - LU632_RS00395 0.62 -0.3 83,474 + LU632_RS00395 0.63 +0.5 83,475 - LU632_RS00395 0.63 +0.3 83,501 + LU632_RS00395 0.64 -1.1 83,502 - LU632_RS00395 0.64 +0.4 83,502 - LU632_RS00395 0.64 +0.2 83,547 + LU632_RS00395 0.66 -0.1 83,571 + LU632_RS00395 0.67 +1.2 83,718 - LU632_RS00395 0.75 -0.5 83,815 - LU632_RS00395 0.80 -0.2 83,859 + LU632_RS00395 0.82 -0.4 83,859 + LU632_RS00395 0.82 -0.7 83,879 + LU632_RS00395 0.83 +0.2 83,879 + LU632_RS00395 0.83 -0.1 83,880 - LU632_RS00395 0.83 +0.6 83,939 + LU632_RS00395 0.86 +0.5 83,939 + LU632_RS00395 0.86 -1.9 83,942 + LU632_RS00395 0.86 -0.1 83,943 - LU632_RS00395 0.86 +0.4 83,943 - LU632_RS00395 0.86 -0.1 83,946 - LU632_RS00395 0.86 +0.4 83,957 + LU632_RS00395 0.87 -0.2 84,013 + LU632_RS00395 0.89 +1.2 84,016 + LU632_RS00395 0.90 -0.1 84,017 - LU632_RS00395 0.90 -0.2 84,038 + -0.6 84,038 + +0.6 84,039 - -0.4 84,172 + +0.1 84,174 - -0.2 84,256 - -0.1 84,310 + -0.1 84,310 + -0.7 84,310 + -0.1 84,310 + +0.2 84,311 - -0.1 84,311 - -0.1 84,327 + +0.8 84,327 + -0.3 84,327 + -0.4 84,328 - -0.1 84,487 + +0.6 84,494 + +0.4 84,495 - -1.8 84,531 - +0.5 84,556 + +0.1 84,603 + -0.3 84,605 + -0.2 84,680 - -0.1 84,900 + LU632_RS00400 0.27 -0.6
Or see this region's nucleotide sequence