Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00300 and LU632_RS00305 are separated by 156 nucleotides LU632_RS00305 and LU632_RS00310 are separated by 121 nucleotides
LU632_RS00300: LU632_RS00300 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 60,568 to 61,599
_RS00300
LU632_RS00305: LU632_RS00305 - glycosyl hydrolase family 8, at 61,756 to 62,675
_RS00305
LU632_RS00310: LU632_RS00310 - DUF2235 domain-containing protein, at 62,797 to 64,257
_RS00310
Position (kb) 61
62
63 Strain fitness (log2 ratio) -2
-1
0
1
2 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.890 kb on - strand, within LU632_RS00300 at 60.918 kb on + strand, within LU632_RS00300 at 60.918 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.026 kb on - strand, within LU632_RS00300 at 61.181 kb on + strand, within LU632_RS00300 at 61.181 kb on + strand, within LU632_RS00300 at 61.181 kb on + strand, within LU632_RS00300 at 61.183 kb on + strand, within LU632_RS00300 at 61.184 kb on - strand, within LU632_RS00300 at 61.243 kb on - strand, within LU632_RS00300 at 61.274 kb on + strand, within LU632_RS00300 at 61.275 kb on - strand, within LU632_RS00300 at 61.277 kb on - strand, within LU632_RS00300 at 61.284 kb on + strand, within LU632_RS00300 at 61.387 kb on + strand, within LU632_RS00300 at 61.406 kb on + strand, within LU632_RS00300 at 61.427 kb on - strand, within LU632_RS00300 at 61.430 kb on - strand, within LU632_RS00300 at 61.430 kb on - strand, within LU632_RS00300 at 61.557 kb on + strand at 61.727 kb on + strand at 61.727 kb on + strand at 61.728 kb on - strand at 61.728 kb on - strand at 61.854 kb on + strand, within LU632_RS00305 at 61.854 kb on + strand, within LU632_RS00305 at 61.855 kb on - strand, within LU632_RS00305 at 61.857 kb on + strand, within LU632_RS00305 at 61.858 kb on - strand, within LU632_RS00305 at 61.859 kb on + strand, within LU632_RS00305 at 61.860 kb on - strand, within LU632_RS00305 at 61.860 kb on - strand, within LU632_RS00305 at 61.860 kb on - strand, within LU632_RS00305 at 61.860 kb on - strand, within LU632_RS00305 at 61.909 kb on - strand, within LU632_RS00305 at 61.956 kb on - strand, within LU632_RS00305 at 62.071 kb on - strand, within LU632_RS00305 at 62.077 kb on + strand, within LU632_RS00305 at 62.145 kb on - strand, within LU632_RS00305 at 62.145 kb on - strand, within LU632_RS00305 at 62.155 kb on + strand, within LU632_RS00305 at 62.188 kb on - strand, within LU632_RS00305 at 62.188 kb on - strand, within LU632_RS00305 at 62.188 kb on - strand, within LU632_RS00305 at 62.392 kb on + strand, within LU632_RS00305 at 62.392 kb on + strand, within LU632_RS00305 at 62.393 kb on - strand, within LU632_RS00305 at 62.416 kb on + strand, within LU632_RS00305 at 62.482 kb on + strand, within LU632_RS00305 at 62.491 kb on - strand, within LU632_RS00305 at 62.523 kb on - strand, within LU632_RS00305 at 62.523 kb on - strand, within LU632_RS00305 at 62.525 kb on + strand, within LU632_RS00305 at 62.526 kb on - strand, within LU632_RS00305 at 62.537 kb on + strand, within LU632_RS00305 at 62.537 kb on + strand, within LU632_RS00305 at 62.537 kb on + strand, within LU632_RS00305 at 62.537 kb on + strand, within LU632_RS00305 at 62.537 kb on + strand, within LU632_RS00305 at 62.538 kb on - strand, within LU632_RS00305 at 62.538 kb on - strand, within LU632_RS00305 at 62.538 kb on - strand, within LU632_RS00305 at 62.538 kb on - strand, within LU632_RS00305 at 62.538 kb on - strand, within LU632_RS00305 at 62.622 kb on + strand at 62.626 kb on - strand at 62.691 kb on - strand at 62.762 kb on + strand at 62.762 kb on + strand at 62.762 kb on + strand at 62.775 kb on - strand at 62.797 kb on - strand at 62.856 kb on + strand at 62.974 kb on + strand, within LU632_RS00310 at 62.975 kb on - strand, within LU632_RS00310 at 62.975 kb on - strand, within LU632_RS00310 at 62.997 kb on + strand, within LU632_RS00310 at 63.004 kb on + strand, within LU632_RS00310 at 63.052 kb on + strand, within LU632_RS00310 at 63.053 kb on - strand, within LU632_RS00310 at 63.063 kb on + strand, within LU632_RS00310 at 63.066 kb on - strand, within LU632_RS00310 at 63.069 kb on + strand, within LU632_RS00310 at 63.069 kb on + strand, within LU632_RS00310 at 63.069 kb on + strand, within LU632_RS00310 at 63.069 kb on + strand, within LU632_RS00310 at 63.070 kb on - strand, within LU632_RS00310 at 63.070 kb on - strand, within LU632_RS00310 at 63.297 kb on + strand, within LU632_RS00310 at 63.297 kb on + strand, within LU632_RS00310 at 63.297 kb on + strand, within LU632_RS00310 at 63.298 kb on - strand, within LU632_RS00310 at 63.298 kb on - strand, within LU632_RS00310 at 63.353 kb on - strand, within LU632_RS00310 at 63.425 kb on + strand, within LU632_RS00310 at 63.464 kb on + strand, within LU632_RS00310
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 60,889 + LU632_RS00300 0.31 -0.2 60,889 + LU632_RS00300 0.31 -0.6 60,889 + LU632_RS00300 0.31 +0.1 60,889 + LU632_RS00300 0.31 -0.4 60,889 + LU632_RS00300 0.31 +0.2 60,890 - LU632_RS00300 0.31 -0.1 60,918 + LU632_RS00300 0.34 +0.8 60,918 + LU632_RS00300 0.34 -0.1 61,025 + LU632_RS00300 0.44 +0.5 61,025 + LU632_RS00300 0.44 +0.0 61,025 + LU632_RS00300 0.44 -0.3 61,025 + LU632_RS00300 0.44 -0.2 61,025 + LU632_RS00300 0.44 +0.5 61,026 - LU632_RS00300 0.44 +0.2 61,181 + LU632_RS00300 0.59 +0.5 61,181 + LU632_RS00300 0.59 -0.3 61,181 + LU632_RS00300 0.59 -0.2 61,183 + LU632_RS00300 0.60 -0.1 61,184 - LU632_RS00300 0.60 +0.2 61,243 - LU632_RS00300 0.65 -0.4 61,274 + LU632_RS00300 0.68 -1.9 61,275 - LU632_RS00300 0.69 -1.5 61,277 - LU632_RS00300 0.69 -0.2 61,284 + LU632_RS00300 0.69 -1.1 61,387 + LU632_RS00300 0.79 -0.3 61,406 + LU632_RS00300 0.81 +0.1 61,427 - LU632_RS00300 0.83 -0.2 61,430 - LU632_RS00300 0.84 +0.8 61,430 - LU632_RS00300 0.84 +1.3 61,557 + +0.1 61,727 + +0.4 61,727 + -0.6 61,728 - -0.2 61,728 - -2.1 61,854 + LU632_RS00305 0.11 -1.3 61,854 + LU632_RS00305 0.11 -1.1 61,855 - LU632_RS00305 0.11 +0.8 61,857 + LU632_RS00305 0.11 +0.6 61,858 - LU632_RS00305 0.11 -0.2 61,859 + LU632_RS00305 0.11 +0.7 61,860 - LU632_RS00305 0.11 +0.2 61,860 - LU632_RS00305 0.11 -1.2 61,860 - LU632_RS00305 0.11 -0.5 61,860 - LU632_RS00305 0.11 -0.2 61,909 - LU632_RS00305 0.17 -0.8 61,956 - LU632_RS00305 0.22 +0.2 62,071 - LU632_RS00305 0.34 +0.1 62,077 + LU632_RS00305 0.35 -0.3 62,145 - LU632_RS00305 0.42 -0.3 62,145 - LU632_RS00305 0.42 -0.7 62,155 + LU632_RS00305 0.43 +0.2 62,188 - LU632_RS00305 0.47 +0.9 62,188 - LU632_RS00305 0.47 +0.6 62,188 - LU632_RS00305 0.47 +0.4 62,392 + LU632_RS00305 0.69 -2.2 62,392 + LU632_RS00305 0.69 +0.1 62,393 - LU632_RS00305 0.69 -0.0 62,416 + LU632_RS00305 0.72 +0.8 62,482 + LU632_RS00305 0.79 -0.9 62,491 - LU632_RS00305 0.80 -0.4 62,523 - LU632_RS00305 0.83 -0.3 62,523 - LU632_RS00305 0.83 +0.4 62,525 + LU632_RS00305 0.84 -1.1 62,526 - LU632_RS00305 0.84 +0.0 62,537 + LU632_RS00305 0.85 +0.2 62,537 + LU632_RS00305 0.85 -0.1 62,537 + LU632_RS00305 0.85 +0.2 62,537 + LU632_RS00305 0.85 -0.1 62,537 + LU632_RS00305 0.85 -0.7 62,538 - LU632_RS00305 0.85 -2.0 62,538 - LU632_RS00305 0.85 -0.3 62,538 - LU632_RS00305 0.85 +0.1 62,538 - LU632_RS00305 0.85 +0.4 62,538 - LU632_RS00305 0.85 +0.5 62,622 + +0.3 62,626 - +0.5 62,691 - -0.4 62,762 + -0.8 62,762 + -0.1 62,762 + +0.5 62,775 - +1.2 62,797 - -0.6 62,856 + -0.5 62,974 + LU632_RS00310 0.12 -0.9 62,975 - LU632_RS00310 0.12 -0.3 62,975 - LU632_RS00310 0.12 +0.0 62,997 + LU632_RS00310 0.14 +0.4 63,004 + LU632_RS00310 0.14 +1.8 63,052 + LU632_RS00310 0.17 -0.9 63,053 - LU632_RS00310 0.18 +0.1 63,063 + LU632_RS00310 0.18 -0.5 63,066 - LU632_RS00310 0.18 +0.1 63,069 + LU632_RS00310 0.19 -0.1 63,069 + LU632_RS00310 0.19 +0.4 63,069 + LU632_RS00310 0.19 -1.6 63,069 + LU632_RS00310 0.19 +0.8 63,070 - LU632_RS00310 0.19 -0.4 63,070 - LU632_RS00310 0.19 -0.5 63,297 + LU632_RS00310 0.34 +0.1 63,297 + LU632_RS00310 0.34 +0.8 63,297 + LU632_RS00310 0.34 +1.8 63,298 - LU632_RS00310 0.34 -0.3 63,298 - LU632_RS00310 0.34 +0.2 63,353 - LU632_RS00310 0.38 -0.2 63,425 + LU632_RS00310 0.43 +0.7 63,464 + LU632_RS00310 0.46 +0.4
Or see this region's nucleotide sequence