Strain Fitness in Escherichia coli BL21 around ECD_t00028

Experiment: Bas30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01635 and ECD_t00027 are separated by 307 nucleotidesECD_t00027 and ECD_t00028 are separated by 4 nucleotidesECD_t00028 and ECD_01636 are separated by 107 nucleotidesECD_01636 and ECD_01637 are separated by 125 nucleotides ECD_01635: ECD_01635 - autotransporter adhesin-related protein, at 1,690,140 to 1,691,396 _01635 ECD_t00027: ECD_t00027 - tRNA-Val, at 1,691,704 to 1,691,780 _t00027 ECD_t00028: ECD_t00028 - tRNA-Val, at 1,691,785 to 1,691,861 _t00028 ECD_01636: ECD_01636 - putative monooxygenase, at 1,691,969 to 1,692,274 _01636 ECD_01637: ECD_01637 - putative oxidoreductase, at 1,692,400 to 1,694,004 _01637 Position (kb) 1691 1692Strain fitness (log2 ratio) -1 0 1 2at 1690.806 kb on - strand, within ECD_01635at 1690.933 kb on - strand, within ECD_01635at 1691.439 kb on - strandat 1691.695 kb on + strandat 1691.695 kb on + strandat 1691.695 kb on + strandat 1691.711 kb on + strandat 1691.711 kb on + strandat 1691.916 kb on + strandat 1691.916 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas30
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1,690,806 - ECD_01635 0.53 -0.3
1,690,933 - ECD_01635 0.63 +0.9
1,691,439 - +1.8
1,691,695 + +0.5
1,691,695 + +0.0
1,691,695 + -0.0
1,691,711 + -0.1
1,691,711 + -1.0
1,691,916 + -0.0
1,691,916 + +0.2

Or see this region's nucleotide sequence