Experiment: Bas30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_t00015 and ECD_t00016 are separated by 135 nucleotides ECD_t00016 and ECD_t00017 are separated by 2 nucleotides ECD_t00017 and ECD_t00018 are separated by 51 nucleotides ECD_t00018 and ECD_t00019 are separated by 3 nucleotides ECD_t00019 and ECD_t00020 are separated by 146 nucleotides ECD_t00020 and ECD_t00021 are separated by 132 nucleotides ECD_t00021 and ECD_00703 are separated by 277 nucleotides
ECD_t00015: ECD_t00015 - tRNA-Lys, at 739,215 to 739,290
_t00015
ECD_t00016: ECD_t00016 - tRNA-Val, at 739,426 to 739,501
_t00016
ECD_t00017: ECD_t00017 - tRNA-Lys, at 739,504 to 739,579
_t00017
ECD_t00018: ECD_t00018 - tRNA-Val, at 739,631 to 739,706
_t00018
ECD_t00019: ECD_t00019 - tRNA-Lys, at 739,710 to 739,785
_t00019
ECD_t00020: ECD_t00020 - tRNA-Lys, at 739,932 to 740,007
_t00020
ECD_t00021: ECD_t00021 - tRNA-Lys, at 740,140 to 740,215
_t00021
ECD_00703: ECD_00703 - quinolinate synthase, subunit A, at 740,493 to 741,536
_00703
Position (kb) 740
741 Strain fitness (log2 ratio) -1
0
1 at 739.164 kb on + strand at 739.164 kb on + strand at 739.397 kb on + strand at 739.397 kb on + strand at 739.397 kb on + strand at 739.397 kb on + strand at 739.397 kb on + strand at 739.397 kb on + strand at 739.397 kb on + strand at 739.397 kb on + strand at 739.401 kb on + strand at 739.401 kb on + strand at 739.401 kb on + strand at 739.401 kb on + strand at 739.401 kb on + strand at 739.401 kb on + strand at 739.401 kb on + strand at 739.407 kb on + strand at 739.407 kb on + strand at 739.407 kb on + strand at 739.407 kb on + strand at 739.419 kb on + strand at 739.419 kb on + strand at 739.539 kb on + strand, within ECD_t00017 at 739.581 kb on + strand at 739.585 kb on + strand at 739.585 kb on + strand at 739.585 kb on + strand at 739.585 kb on + strand at 739.605 kb on + strand at 739.605 kb on + strand at 739.612 kb on + strand at 739.612 kb on + strand at 739.612 kb on + strand at 739.745 kb on + strand, within ECD_t00019 at 739.809 kb on + strand at 740.128 kb on + strand at 740.412 kb on + strand at 740.500 kb on + strand at 740.613 kb on - strand, within ECD_00703 at 741.073 kb on + strand, within ECD_00703 at 741.073 kb on + strand, within ECD_00703 at 741.073 kb on + strand, within ECD_00703 at 741.073 kb on + strand, within ECD_00703 at 741.074 kb on - strand, within ECD_00703 at 741.188 kb on + strand, within ECD_00703
Per-strain Table
Position Strand Gene LocusTag Fraction Bas30 remove 739,164 + -0.9 739,164 + -1.3 739,397 + +0.1 739,397 + -0.5 739,397 + -0.5 739,397 + -0.3 739,397 + -0.2 739,397 + +1.5 739,397 + +0.0 739,397 + -0.2 739,401 + +0.3 739,401 + +0.1 739,401 + -0.4 739,401 + -0.0 739,401 + -0.1 739,401 + +1.3 739,401 + +0.3 739,407 + +0.0 739,407 + -1.2 739,407 + -1.1 739,407 + +0.3 739,419 + -0.3 739,419 + +0.3 739,539 + ECD_t00017 0.46 +0.6 739,581 + -0.0 739,585 + +0.8 739,585 + -0.2 739,585 + +0.3 739,585 + -0.3 739,605 + -0.3 739,605 + +0.3 739,612 + -0.4 739,612 + -0.0 739,612 + -0.8 739,745 + ECD_t00019 0.46 +1.4 739,809 + -1.0 740,128 + -0.4 740,412 + +0.6 740,500 + +0.5 740,613 - ECD_00703 0.11 +0.2 741,073 + ECD_00703 0.56 +0.1 741,073 + ECD_00703 0.56 +0.1 741,073 + ECD_00703 0.56 -0.1 741,073 + ECD_00703 0.56 -0.7 741,074 - ECD_00703 0.56 -0.4 741,188 + ECD_00703 0.67 -0.3
Or see this region's nucleotide sequence