Experiment: Bas30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_r00005 and ECD_t00045 are separated by 184 nucleotides ECD_t00045 and ECD_r00006 are separated by 85 nucleotides ECD_r00006 and ECD_02482 are separated by 443 nucleotides
ECD_r00005: ECD_r00005 - 23S ribosomal RNA, at 2,592,879 to 2,595,784
_r00005
ECD_t00045: ECD_t00045 - tRNA-Glu, at 2,595,969 to 2,596,044
_t00045
ECD_r00006: ECD_r00006 - 16S ribosomal RNA, at 2,596,130 to 2,597,671
_r00006
ECD_02482: ECD_02482 - protein disaggregation chaperone, at 2,598,115 to 2,600,688
_02482
Position (kb)
2596
2597
2598 Strain fitness (log2 ratio)
-1
0
1 at 2598.077 kb on - strand at 2598.078 kb on + strand at 2598.166 kb on - strand at 2598.191 kb on - strand at 2598.191 kb on - strand at 2598.254 kb on + strand at 2598.339 kb on + strand at 2598.342 kb on - strand at 2598.488 kb on + strand, within ECD_02482 at 2598.544 kb on - strand, within ECD_02482 at 2598.555 kb on + strand, within ECD_02482 at 2598.556 kb on - strand, within ECD_02482 at 2598.556 kb on - strand, within ECD_02482 at 2598.556 kb on - strand, within ECD_02482 at 2598.625 kb on - strand, within ECD_02482 at 2598.625 kb on - strand, within ECD_02482 at 2598.625 kb on - strand, within ECD_02482
Per-strain Table
Position Strand Gene LocusTag Fraction Bas30 remove 2,598,077 - +0.2 2,598,078 + +0.3 2,598,166 - +0.1 2,598,191 - +0.4 2,598,191 - -0.0 2,598,254 + +0.1 2,598,339 + -0.0 2,598,342 - +0.1 2,598,488 + ECD_02482 0.14 +0.9 2,598,544 - ECD_02482 0.17 -0.1 2,598,555 + ECD_02482 0.17 +0.1 2,598,556 - ECD_02482 0.17 +0.8 2,598,556 - ECD_02482 0.17 +0.4 2,598,556 - ECD_02482 0.17 -0.2 2,598,625 - ECD_02482 0.20 -0.2 2,598,625 - ECD_02482 0.20 +0.8 2,598,625 - ECD_02482 0.20 +0.8
Or see this region's nucleotide sequence