Experiment: Bas30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04048 and ECD_04049 are separated by 18 nucleotides ECD_04049 and ECD_04050 are separated by 50 nucleotides ECD_04050 and ECD_04051 are separated by 17 nucleotides ECD_04051 and ECD_04052 are separated by 9 nucleotides
ECD_04048: ECD_04048 - DUF2170 family protein, at 4,316,653 to 4,317,054
_04048
ECD_04049: ECD_04049 - PspA/IM30 family protein, at 4,317,073 to 4,317,771
_04049
ECD_04050: ECD_04050 - DUF2491 family protein, at 4,317,822 to 4,318,481
_04050
ECD_04051: ECD_04051 - UPF0719 family inner membrane protein, at 4,318,499 to 4,318,897
_04051
ECD_04052: ECD_04052 - DUF1190 family protein, at 4,318,907 to 4,319,545
_04052
Position (kb) 4317
4318
4319 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4316.832 kb on + strand, within ECD_04048 at 4316.935 kb on + strand, within ECD_04048 at 4317.328 kb on - strand, within ECD_04049 at 4317.737 kb on + strand at 4317.737 kb on + strand at 4317.741 kb on - strand at 4317.860 kb on + strand at 4318.035 kb on + strand, within ECD_04050 at 4318.038 kb on + strand, within ECD_04050 at 4318.039 kb on - strand, within ECD_04050 at 4318.088 kb on + strand, within ECD_04050 at 4318.089 kb on - strand, within ECD_04050 at 4318.135 kb on - strand, within ECD_04050 at 4318.470 kb on - strand at 4318.671 kb on - strand, within ECD_04051 at 4318.786 kb on + strand, within ECD_04051 at 4318.885 kb on + strand at 4318.933 kb on + strand at 4318.939 kb on + strand at 4319.083 kb on + strand, within ECD_04052 at 4319.221 kb on + strand, within ECD_04052 at 4319.221 kb on + strand, within ECD_04052 at 4319.221 kb on + strand, within ECD_04052 at 4319.245 kb on + strand, within ECD_04052 at 4319.245 kb on + strand, within ECD_04052 at 4319.246 kb on - strand, within ECD_04052 at 4319.264 kb on + strand, within ECD_04052 at 4319.355 kb on - strand, within ECD_04052 at 4319.415 kb on - strand, within ECD_04052 at 4319.450 kb on + strand, within ECD_04052
Per-strain Table
Position Strand Gene LocusTag Fraction Bas30 remove 4,316,832 + ECD_04048 0.45 +0.9 4,316,935 + ECD_04048 0.70 +0.0 4,317,328 - ECD_04049 0.36 -0.6 4,317,737 + +0.4 4,317,737 + -0.4 4,317,741 - -1.6 4,317,860 + +0.6 4,318,035 + ECD_04050 0.32 -0.2 4,318,038 + ECD_04050 0.33 +0.5 4,318,039 - ECD_04050 0.33 +0.2 4,318,088 + ECD_04050 0.40 +0.4 4,318,089 - ECD_04050 0.40 -0.1 4,318,135 - ECD_04050 0.47 +1.1 4,318,470 - +0.3 4,318,671 - ECD_04051 0.43 -1.0 4,318,786 + ECD_04051 0.72 -0.8 4,318,885 + -0.4 4,318,933 + +0.2 4,318,939 + -1.3 4,319,083 + ECD_04052 0.28 -0.4 4,319,221 + ECD_04052 0.49 -0.1 4,319,221 + ECD_04052 0.49 +0.0 4,319,221 + ECD_04052 0.49 +0.3 4,319,245 + ECD_04052 0.53 -0.0 4,319,245 + ECD_04052 0.53 +0.2 4,319,246 - ECD_04052 0.53 -3.7 4,319,264 + ECD_04052 0.56 +0.7 4,319,355 - ECD_04052 0.70 -0.2 4,319,415 - ECD_04052 0.79 +0.2 4,319,450 + ECD_04052 0.85 +0.0
Or see this region's nucleotide sequence