Strain Fitness in Escherichia coli BL21 around ECD_03906

Experiment: Bas30

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03905 and ECD_03906 are separated by 153 nucleotidesECD_03906 and ECD_03907 are separated by 364 nucleotides ECD_03905: ECD_03905 - maltose transporter subunit, at 4,150,903 to 4,152,447 _03905 ECD_03906: ECD_03906 - maltose transporter subunit, at 4,152,601 to 4,153,791 _03906 ECD_03907: ECD_03907 - maltose ABC transporter ATPase, at 4,154,156 to 4,155,271 _03907 Position (kb) 4152 4153 4154Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4151.695 kb on + strand, within ECD_03905at 4151.738 kb on + strand, within ECD_03905at 4151.817 kb on - strand, within ECD_03905at 4151.817 kb on - strand, within ECD_03905at 4152.089 kb on + strand, within ECD_03905at 4152.118 kb on + strand, within ECD_03905at 4152.119 kb on - strand, within ECD_03905at 4152.119 kb on - strand, within ECD_03905at 4152.119 kb on - strand, within ECD_03905at 4152.119 kb on - strand, within ECD_03905at 4152.167 kb on + strand, within ECD_03905at 4152.168 kb on - strand, within ECD_03905at 4152.249 kb on - strand, within ECD_03905at 4152.249 kb on - strand, within ECD_03905at 4152.249 kb on - strand, within ECD_03905at 4152.283 kb on - strand, within ECD_03905at 4152.284 kb on + strand, within ECD_03905at 4152.284 kb on + strand, within ECD_03905at 4152.329 kb on + strandat 4152.329 kb on + strandat 4152.329 kb on + strandat 4152.330 kb on - strandat 4152.344 kb on + strandat 4152.349 kb on + strandat 4152.388 kb on + strandat 4152.389 kb on - strandat 4152.435 kb on + strandat 4152.435 kb on + strandat 4152.435 kb on + strandat 4152.529 kb on + strandat 4152.538 kb on + strandat 4152.542 kb on + strandat 4152.542 kb on + strandat 4152.542 kb on + strandat 4152.542 kb on + strandat 4152.543 kb on - strandat 4152.543 kb on - strandat 4152.602 kb on + strandat 4152.602 kb on + strandat 4152.603 kb on - strandat 4152.603 kb on - strandat 4152.603 kb on - strandat 4152.612 kb on + strandat 4152.682 kb on - strandat 4152.693 kb on - strandat 4152.765 kb on + strand, within ECD_03906at 4152.766 kb on - strand, within ECD_03906at 4152.795 kb on - strand, within ECD_03906at 4152.795 kb on - strand, within ECD_03906at 4152.831 kb on + strand, within ECD_03906at 4152.832 kb on - strand, within ECD_03906at 4152.832 kb on - strand, within ECD_03906at 4152.867 kb on - strand, within ECD_03906at 4152.918 kb on + strand, within ECD_03906at 4152.989 kb on + strand, within ECD_03906at 4152.989 kb on + strand, within ECD_03906at 4152.990 kb on - strand, within ECD_03906at 4152.990 kb on - strand, within ECD_03906at 4152.990 kb on - strand, within ECD_03906at 4153.059 kb on + strand, within ECD_03906at 4153.060 kb on - strand, within ECD_03906at 4153.060 kb on - strand, within ECD_03906at 4153.060 kb on - strand, within ECD_03906at 4153.179 kb on + strand, within ECD_03906at 4153.250 kb on + strand, within ECD_03906at 4153.250 kb on + strand, within ECD_03906at 4153.251 kb on - strand, within ECD_03906at 4153.419 kb on - strand, within ECD_03906at 4153.423 kb on + strand, within ECD_03906at 4153.536 kb on + strand, within ECD_03906at 4153.537 kb on - strand, within ECD_03906at 4153.614 kb on + strand, within ECD_03906at 4153.664 kb on + strand, within ECD_03906at 4153.665 kb on - strand, within ECD_03906at 4153.699 kb on - strandat 4153.699 kb on - strandat 4153.699 kb on - strandat 4153.699 kb on - strandat 4153.791 kb on + strandat 4153.797 kb on - strandat 4153.797 kb on - strandat 4153.832 kb on + strandat 4153.843 kb on + strandat 4153.844 kb on - strandat 4153.853 kb on - strandat 4153.855 kb on - strandat 4153.992 kb on + strandat 4153.992 kb on + strandat 4154.007 kb on + strandat 4154.076 kb on + strandat 4154.098 kb on + strandat 4154.099 kb on - strandat 4154.140 kb on - strandat 4154.166 kb on + strandat 4154.166 kb on + strandat 4154.166 kb on + strandat 4154.166 kb on + strandat 4154.166 kb on + strandat 4154.166 kb on + strandat 4154.167 kb on - strandat 4154.167 kb on - strandat 4154.167 kb on - strandat 4154.218 kb on + strandat 4154.289 kb on + strand, within ECD_03907at 4154.290 kb on - strand, within ECD_03907at 4154.389 kb on + strand, within ECD_03907at 4154.389 kb on + strand, within ECD_03907at 4154.406 kb on - strand, within ECD_03907at 4154.406 kb on - strand, within ECD_03907at 4154.517 kb on + strand, within ECD_03907at 4154.617 kb on - strand, within ECD_03907at 4154.720 kb on + strand, within ECD_03907at 4154.721 kb on - strand, within ECD_03907

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas30
remove
4,151,695 + ECD_03905 0.51 -0.0
4,151,738 + ECD_03905 0.54 -0.5
4,151,817 - ECD_03905 0.59 -0.4
4,151,817 - ECD_03905 0.59 -0.4
4,152,089 + ECD_03905 0.77 -0.1
4,152,118 + ECD_03905 0.79 +0.6
4,152,119 - ECD_03905 0.79 +0.8
4,152,119 - ECD_03905 0.79 -0.3
4,152,119 - ECD_03905 0.79 -0.7
4,152,119 - ECD_03905 0.79 +0.3
4,152,167 + ECD_03905 0.82 +0.0
4,152,168 - ECD_03905 0.82 -0.2
4,152,249 - ECD_03905 0.87 +0.8
4,152,249 - ECD_03905 0.87 -0.2
4,152,249 - ECD_03905 0.87 -0.3
4,152,283 - ECD_03905 0.89 +0.7
4,152,284 + ECD_03905 0.89 -1.4
4,152,284 + ECD_03905 0.89 -0.4
4,152,329 + -0.5
4,152,329 + +1.0
4,152,329 + +0.4
4,152,330 - -0.2
4,152,344 + +0.0
4,152,349 + -0.3
4,152,388 + +0.4
4,152,389 - +0.1
4,152,435 + +0.4
4,152,435 + -0.4
4,152,435 + -0.0
4,152,529 + -0.0
4,152,538 + +0.6
4,152,542 + +0.8
4,152,542 + -1.7
4,152,542 + +0.1
4,152,542 + -0.6
4,152,543 - +1.3
4,152,543 - +0.1
4,152,602 + +0.5
4,152,602 + +0.5
4,152,603 - +0.6
4,152,603 - -0.1
4,152,603 - +0.3
4,152,612 + +0.0
4,152,682 - +0.4
4,152,693 - +0.6
4,152,765 + ECD_03906 0.14 +0.4
4,152,766 - ECD_03906 0.14 +0.3
4,152,795 - ECD_03906 0.16 +0.1
4,152,795 - ECD_03906 0.16 -0.3
4,152,831 + ECD_03906 0.19 +0.4
4,152,832 - ECD_03906 0.19 +1.0
4,152,832 - ECD_03906 0.19 +0.1
4,152,867 - ECD_03906 0.22 +0.3
4,152,918 + ECD_03906 0.27 -1.0
4,152,989 + ECD_03906 0.33 -0.2
4,152,989 + ECD_03906 0.33 +0.2
4,152,990 - ECD_03906 0.33 -0.0
4,152,990 - ECD_03906 0.33 +0.0
4,152,990 - ECD_03906 0.33 -0.2
4,153,059 + ECD_03906 0.38 +0.5
4,153,060 - ECD_03906 0.39 +1.5
4,153,060 - ECD_03906 0.39 +0.0
4,153,060 - ECD_03906 0.39 +1.1
4,153,179 + ECD_03906 0.49 -0.3
4,153,250 + ECD_03906 0.54 +1.4
4,153,250 + ECD_03906 0.54 +1.1
4,153,251 - ECD_03906 0.55 -0.9
4,153,419 - ECD_03906 0.69 +0.9
4,153,423 + ECD_03906 0.69 -0.0
4,153,536 + ECD_03906 0.79 +0.5
4,153,537 - ECD_03906 0.79 +0.3
4,153,614 + ECD_03906 0.85 +0.5
4,153,664 + ECD_03906 0.89 -0.8
4,153,665 - ECD_03906 0.89 +0.2
4,153,699 - -0.7
4,153,699 - +0.7
4,153,699 - -0.1
4,153,699 - -0.2
4,153,791 + -0.3
4,153,797 - -0.0
4,153,797 - +0.3
4,153,832 + +0.8
4,153,843 + +0.2
4,153,844 - +0.4
4,153,853 - -0.3
4,153,855 - +0.4
4,153,992 + +0.3
4,153,992 + -0.5
4,154,007 + -0.6
4,154,076 + -3.3
4,154,098 + +0.3
4,154,099 - +0.5
4,154,140 - +2.3
4,154,166 + +0.0
4,154,166 + +0.0
4,154,166 + -2.2
4,154,166 + +0.1
4,154,166 + -0.1
4,154,166 + -0.0
4,154,167 - +0.2
4,154,167 - -0.8
4,154,167 - +0.3
4,154,218 + -0.4
4,154,289 + ECD_03907 0.12 -0.1
4,154,290 - ECD_03907 0.12 -0.8
4,154,389 + ECD_03907 0.21 +0.1
4,154,389 + ECD_03907 0.21 -0.9
4,154,406 - ECD_03907 0.22 -0.2
4,154,406 - ECD_03907 0.22 +0.6
4,154,517 + ECD_03907 0.32 -0.3
4,154,617 - ECD_03907 0.41 -0.8
4,154,720 + ECD_03907 0.51 +0.3
4,154,721 - ECD_03907 0.51 +1.1

Or see this region's nucleotide sequence