Experiment: Bas30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03905 and ECD_03906 are separated by 153 nucleotides ECD_03906 and ECD_03907 are separated by 364 nucleotides
ECD_03905: ECD_03905 - maltose transporter subunit, at 4,150,903 to 4,152,447
_03905
ECD_03906: ECD_03906 - maltose transporter subunit, at 4,152,601 to 4,153,791
_03906
ECD_03907: ECD_03907 - maltose ABC transporter ATPase, at 4,154,156 to 4,155,271
_03907
Position (kb)
4152
4153
4154 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4151.695 kb on + strand, within ECD_03905 at 4151.738 kb on + strand, within ECD_03905 at 4151.817 kb on - strand, within ECD_03905 at 4151.817 kb on - strand, within ECD_03905 at 4152.089 kb on + strand, within ECD_03905 at 4152.118 kb on + strand, within ECD_03905 at 4152.119 kb on - strand, within ECD_03905 at 4152.119 kb on - strand, within ECD_03905 at 4152.119 kb on - strand, within ECD_03905 at 4152.119 kb on - strand, within ECD_03905 at 4152.167 kb on + strand, within ECD_03905 at 4152.168 kb on - strand, within ECD_03905 at 4152.249 kb on - strand, within ECD_03905 at 4152.249 kb on - strand, within ECD_03905 at 4152.249 kb on - strand, within ECD_03905 at 4152.283 kb on - strand, within ECD_03905 at 4152.284 kb on + strand, within ECD_03905 at 4152.284 kb on + strand, within ECD_03905 at 4152.329 kb on + strand at 4152.329 kb on + strand at 4152.329 kb on + strand at 4152.330 kb on - strand at 4152.344 kb on + strand at 4152.349 kb on + strand at 4152.388 kb on + strand at 4152.389 kb on - strand at 4152.435 kb on + strand at 4152.435 kb on + strand at 4152.435 kb on + strand at 4152.529 kb on + strand at 4152.538 kb on + strand at 4152.542 kb on + strand at 4152.542 kb on + strand at 4152.542 kb on + strand at 4152.542 kb on + strand at 4152.543 kb on - strand at 4152.543 kb on - strand at 4152.602 kb on + strand at 4152.602 kb on + strand at 4152.603 kb on - strand at 4152.603 kb on - strand at 4152.603 kb on - strand at 4152.612 kb on + strand at 4152.682 kb on - strand at 4152.693 kb on - strand at 4152.765 kb on + strand, within ECD_03906 at 4152.766 kb on - strand, within ECD_03906 at 4152.795 kb on - strand, within ECD_03906 at 4152.795 kb on - strand, within ECD_03906 at 4152.831 kb on + strand, within ECD_03906 at 4152.832 kb on - strand, within ECD_03906 at 4152.832 kb on - strand, within ECD_03906 at 4152.867 kb on - strand, within ECD_03906 at 4152.918 kb on + strand, within ECD_03906 at 4152.989 kb on + strand, within ECD_03906 at 4152.989 kb on + strand, within ECD_03906 at 4152.990 kb on - strand, within ECD_03906 at 4152.990 kb on - strand, within ECD_03906 at 4152.990 kb on - strand, within ECD_03906 at 4153.059 kb on + strand, within ECD_03906 at 4153.060 kb on - strand, within ECD_03906 at 4153.060 kb on - strand, within ECD_03906 at 4153.060 kb on - strand, within ECD_03906 at 4153.179 kb on + strand, within ECD_03906 at 4153.250 kb on + strand, within ECD_03906 at 4153.250 kb on + strand, within ECD_03906 at 4153.251 kb on - strand, within ECD_03906 at 4153.419 kb on - strand, within ECD_03906 at 4153.423 kb on + strand, within ECD_03906 at 4153.536 kb on + strand, within ECD_03906 at 4153.537 kb on - strand, within ECD_03906 at 4153.614 kb on + strand, within ECD_03906 at 4153.664 kb on + strand, within ECD_03906 at 4153.665 kb on - strand, within ECD_03906 at 4153.699 kb on - strand at 4153.699 kb on - strand at 4153.699 kb on - strand at 4153.699 kb on - strand at 4153.791 kb on + strand at 4153.797 kb on - strand at 4153.797 kb on - strand at 4153.832 kb on + strand at 4153.843 kb on + strand at 4153.844 kb on - strand at 4153.853 kb on - strand at 4153.855 kb on - strand at 4153.992 kb on + strand at 4153.992 kb on + strand at 4154.007 kb on + strand at 4154.076 kb on + strand at 4154.098 kb on + strand at 4154.099 kb on - strand at 4154.140 kb on - strand at 4154.166 kb on + strand at 4154.166 kb on + strand at 4154.166 kb on + strand at 4154.166 kb on + strand at 4154.166 kb on + strand at 4154.166 kb on + strand at 4154.167 kb on - strand at 4154.167 kb on - strand at 4154.167 kb on - strand at 4154.218 kb on + strand at 4154.289 kb on + strand, within ECD_03907 at 4154.290 kb on - strand, within ECD_03907 at 4154.389 kb on + strand, within ECD_03907 at 4154.389 kb on + strand, within ECD_03907 at 4154.406 kb on - strand, within ECD_03907 at 4154.406 kb on - strand, within ECD_03907 at 4154.517 kb on + strand, within ECD_03907 at 4154.617 kb on - strand, within ECD_03907 at 4154.720 kb on + strand, within ECD_03907 at 4154.721 kb on - strand, within ECD_03907
Per-strain Table
Position Strand Gene LocusTag Fraction Bas30 remove 4,151,695 + ECD_03905 0.51 -0.0 4,151,738 + ECD_03905 0.54 -0.5 4,151,817 - ECD_03905 0.59 -0.4 4,151,817 - ECD_03905 0.59 -0.4 4,152,089 + ECD_03905 0.77 -0.1 4,152,118 + ECD_03905 0.79 +0.6 4,152,119 - ECD_03905 0.79 +0.8 4,152,119 - ECD_03905 0.79 -0.3 4,152,119 - ECD_03905 0.79 -0.7 4,152,119 - ECD_03905 0.79 +0.3 4,152,167 + ECD_03905 0.82 +0.0 4,152,168 - ECD_03905 0.82 -0.2 4,152,249 - ECD_03905 0.87 +0.8 4,152,249 - ECD_03905 0.87 -0.2 4,152,249 - ECD_03905 0.87 -0.3 4,152,283 - ECD_03905 0.89 +0.7 4,152,284 + ECD_03905 0.89 -1.4 4,152,284 + ECD_03905 0.89 -0.4 4,152,329 + -0.5 4,152,329 + +1.0 4,152,329 + +0.4 4,152,330 - -0.2 4,152,344 + +0.0 4,152,349 + -0.3 4,152,388 + +0.4 4,152,389 - +0.1 4,152,435 + +0.4 4,152,435 + -0.4 4,152,435 + -0.0 4,152,529 + -0.0 4,152,538 + +0.6 4,152,542 + +0.8 4,152,542 + -1.7 4,152,542 + +0.1 4,152,542 + -0.6 4,152,543 - +1.3 4,152,543 - +0.1 4,152,602 + +0.5 4,152,602 + +0.5 4,152,603 - +0.6 4,152,603 - -0.1 4,152,603 - +0.3 4,152,612 + +0.0 4,152,682 - +0.4 4,152,693 - +0.6 4,152,765 + ECD_03906 0.14 +0.4 4,152,766 - ECD_03906 0.14 +0.3 4,152,795 - ECD_03906 0.16 +0.1 4,152,795 - ECD_03906 0.16 -0.3 4,152,831 + ECD_03906 0.19 +0.4 4,152,832 - ECD_03906 0.19 +1.0 4,152,832 - ECD_03906 0.19 +0.1 4,152,867 - ECD_03906 0.22 +0.3 4,152,918 + ECD_03906 0.27 -1.0 4,152,989 + ECD_03906 0.33 -0.2 4,152,989 + ECD_03906 0.33 +0.2 4,152,990 - ECD_03906 0.33 -0.0 4,152,990 - ECD_03906 0.33 +0.0 4,152,990 - ECD_03906 0.33 -0.2 4,153,059 + ECD_03906 0.38 +0.5 4,153,060 - ECD_03906 0.39 +1.5 4,153,060 - ECD_03906 0.39 +0.0 4,153,060 - ECD_03906 0.39 +1.1 4,153,179 + ECD_03906 0.49 -0.3 4,153,250 + ECD_03906 0.54 +1.4 4,153,250 + ECD_03906 0.54 +1.1 4,153,251 - ECD_03906 0.55 -0.9 4,153,419 - ECD_03906 0.69 +0.9 4,153,423 + ECD_03906 0.69 -0.0 4,153,536 + ECD_03906 0.79 +0.5 4,153,537 - ECD_03906 0.79 +0.3 4,153,614 + ECD_03906 0.85 +0.5 4,153,664 + ECD_03906 0.89 -0.8 4,153,665 - ECD_03906 0.89 +0.2 4,153,699 - -0.7 4,153,699 - +0.7 4,153,699 - -0.1 4,153,699 - -0.2 4,153,791 + -0.3 4,153,797 - -0.0 4,153,797 - +0.3 4,153,832 + +0.8 4,153,843 + +0.2 4,153,844 - +0.4 4,153,853 - -0.3 4,153,855 - +0.4 4,153,992 + +0.3 4,153,992 + -0.5 4,154,007 + -0.6 4,154,076 + -3.3 4,154,098 + +0.3 4,154,099 - +0.5 4,154,140 - +2.3 4,154,166 + +0.0 4,154,166 + +0.0 4,154,166 + -2.2 4,154,166 + +0.1 4,154,166 + -0.1 4,154,166 + -0.0 4,154,167 - +0.2 4,154,167 - -0.8 4,154,167 - +0.3 4,154,218 + -0.4 4,154,289 + ECD_03907 0.12 -0.1 4,154,290 - ECD_03907 0.12 -0.8 4,154,389 + ECD_03907 0.21 +0.1 4,154,389 + ECD_03907 0.21 -0.9 4,154,406 - ECD_03907 0.22 -0.2 4,154,406 - ECD_03907 0.22 +0.6 4,154,517 + ECD_03907 0.32 -0.3 4,154,617 - ECD_03907 0.41 -0.8 4,154,720 + ECD_03907 0.51 +0.3 4,154,721 - ECD_03907 0.51 +1.1
Or see this region's nucleotide sequence