Strain Fitness in Escherichia coli BL21 around ECD_03819

Experiment: Bas30

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03818 and ECD_03819 are separated by 91 nucleotidesECD_03819 and ECD_03820 are separated by 155 nucleotides ECD_03818: ECD_03818 - essential cell division protein, at 4,030,303 to 4,031,262 _03818 ECD_03819: ECD_03819 - Anti-activator for CytR-CRP nucleoside utilization regulon, at 4,031,354 to 4,032,379 _03819 ECD_03820: ECD_03820 - Primosome factor n, at 4,032,535 to 4,034,733 _03820 Position (kb) 4031 4032 4033Strain fitness (log2 ratio) -1 0 1at 4030.472 kb on - strand, within ECD_03818at 4030.472 kb on - strand, within ECD_03818at 4030.711 kb on - strand, within ECD_03818at 4030.711 kb on - strand, within ECD_03818at 4030.777 kb on + strand, within ECD_03818at 4031.305 kb on - strandat 4031.386 kb on + strandat 4031.386 kb on + strandat 4031.387 kb on - strandat 4031.387 kb on - strandat 4031.387 kb on - strandat 4031.387 kb on - strandat 4031.387 kb on - strandat 4031.450 kb on + strandat 4031.458 kb on + strand, within ECD_03819at 4031.459 kb on - strand, within ECD_03819at 4031.459 kb on - strand, within ECD_03819at 4031.459 kb on - strand, within ECD_03819at 4031.459 kb on - strand, within ECD_03819at 4031.459 kb on - strand, within ECD_03819at 4031.459 kb on - strand, within ECD_03819at 4031.718 kb on + strand, within ECD_03819at 4031.718 kb on + strand, within ECD_03819at 4031.719 kb on - strand, within ECD_03819at 4031.734 kb on + strand, within ECD_03819at 4031.812 kb on + strand, within ECD_03819at 4031.841 kb on + strand, within ECD_03819at 4031.842 kb on - strand, within ECD_03819at 4031.842 kb on - strand, within ECD_03819at 4031.844 kb on - strand, within ECD_03819at 4031.844 kb on - strand, within ECD_03819at 4031.844 kb on - strand, within ECD_03819at 4031.847 kb on + strand, within ECD_03819at 4031.847 kb on + strand, within ECD_03819at 4031.848 kb on - strand, within ECD_03819at 4031.852 kb on + strand, within ECD_03819at 4031.893 kb on + strand, within ECD_03819at 4031.893 kb on + strand, within ECD_03819at 4031.893 kb on + strand, within ECD_03819at 4031.894 kb on - strand, within ECD_03819at 4031.947 kb on + strand, within ECD_03819at 4031.948 kb on - strand, within ECD_03819at 4032.187 kb on + strand, within ECD_03819at 4032.209 kb on - strand, within ECD_03819at 4032.222 kb on + strand, within ECD_03819at 4032.408 kb on + strandat 4032.408 kb on + strandat 4032.409 kb on - strandat 4032.409 kb on - strandat 4032.411 kb on + strandat 4032.411 kb on + strandat 4032.411 kb on + strandat 4032.411 kb on + strandat 4032.411 kb on + strandat 4032.411 kb on + strandat 4032.411 kb on + strandat 4032.412 kb on - strandat 4032.412 kb on - strandat 4032.412 kb on - strandat 4032.424 kb on - strandat 4032.424 kb on - strandat 4032.424 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas30
remove
4,030,472 - ECD_03818 0.18 -1.0
4,030,472 - ECD_03818 0.18 -0.1
4,030,711 - ECD_03818 0.42 -0.4
4,030,711 - ECD_03818 0.42 -1.3
4,030,777 + ECD_03818 0.49 -1.7
4,031,305 - -0.9
4,031,386 + +0.0
4,031,386 + +0.5
4,031,387 - +0.7
4,031,387 - -0.1
4,031,387 - +0.6
4,031,387 - -0.6
4,031,387 - -0.7
4,031,450 + +0.4
4,031,458 + ECD_03819 0.10 +0.0
4,031,459 - ECD_03819 0.10 +0.4
4,031,459 - ECD_03819 0.10 +1.1
4,031,459 - ECD_03819 0.10 -0.1
4,031,459 - ECD_03819 0.10 -0.0
4,031,459 - ECD_03819 0.10 -0.1
4,031,459 - ECD_03819 0.10 +0.8
4,031,718 + ECD_03819 0.35 -0.1
4,031,718 + ECD_03819 0.35 +0.5
4,031,719 - ECD_03819 0.36 +0.5
4,031,734 + ECD_03819 0.37 +0.0
4,031,812 + ECD_03819 0.45 +0.8
4,031,841 + ECD_03819 0.47 -0.9
4,031,842 - ECD_03819 0.48 +0.5
4,031,842 - ECD_03819 0.48 +1.0
4,031,844 - ECD_03819 0.48 +0.2
4,031,844 - ECD_03819 0.48 +0.0
4,031,844 - ECD_03819 0.48 -0.2
4,031,847 + ECD_03819 0.48 -0.6
4,031,847 + ECD_03819 0.48 +0.7
4,031,848 - ECD_03819 0.48 +0.6
4,031,852 + ECD_03819 0.49 -0.6
4,031,893 + ECD_03819 0.53 +0.4
4,031,893 + ECD_03819 0.53 +0.4
4,031,893 + ECD_03819 0.53 +0.1
4,031,894 - ECD_03819 0.53 -0.4
4,031,947 + ECD_03819 0.58 -0.1
4,031,948 - ECD_03819 0.58 +0.3
4,032,187 + ECD_03819 0.81 +0.7
4,032,209 - ECD_03819 0.83 +0.3
4,032,222 + ECD_03819 0.85 +0.1
4,032,408 + -0.4
4,032,408 + +0.1
4,032,409 - +0.1
4,032,409 - +0.4
4,032,411 + -0.7
4,032,411 + +1.0
4,032,411 + +0.4
4,032,411 + -0.2
4,032,411 + +0.4
4,032,411 + +0.3
4,032,411 + +0.3
4,032,412 - +0.4
4,032,412 - -0.2
4,032,412 - +0.1
4,032,424 - -0.6
4,032,424 - +0.5
4,032,424 - +0.4

Or see this region's nucleotide sequence