Experiment: Bas30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03756 and ECD_03757 are separated by 216 nucleotides ECD_03757 and ECD_03758 are separated by 7 nucleotides
ECD_03756: ECD_03756 - GTP-binding protein, at 3,965,105 to 3,966,928
_03756
ECD_03757: ECD_03757 - putative DNA-binding transcriptional regulator, at 3,967,145 to 3,967,855
_03757
ECD_03758: ECD_03758 - putative sugar phosphate isomerase, at 3,967,863 to 3,968,843
_03758
Position (kb)
3967
3968 Strain fitness (log2 ratio)
-2
-1
0
1 at 3966.290 kb on - strand, within ECD_03756 at 3966.370 kb on + strand, within ECD_03756 at 3966.414 kb on + strand, within ECD_03756 at 3966.414 kb on + strand, within ECD_03756 at 3966.415 kb on - strand, within ECD_03756 at 3966.415 kb on - strand, within ECD_03756 at 3966.500 kb on + strand, within ECD_03756 at 3966.528 kb on + strand, within ECD_03756 at 3966.586 kb on + strand, within ECD_03756 at 3966.685 kb on + strand, within ECD_03756 at 3966.708 kb on + strand, within ECD_03756 at 3966.709 kb on - strand, within ECD_03756 at 3966.837 kb on + strand at 3966.927 kb on - strand at 3967.007 kb on + strand at 3967.008 kb on - strand at 3967.016 kb on + strand at 3967.016 kb on + strand at 3967.016 kb on + strand at 3967.018 kb on + strand at 3967.058 kb on - strand at 3967.072 kb on - strand at 3967.140 kb on - strand at 3967.168 kb on - strand at 3967.270 kb on + strand, within ECD_03757 at 3967.370 kb on - strand, within ECD_03757 at 3967.556 kb on - strand, within ECD_03757 at 3967.578 kb on - strand, within ECD_03757 at 3967.578 kb on - strand, within ECD_03757 at 3967.579 kb on + strand, within ECD_03757 at 3967.579 kb on + strand, within ECD_03757 at 3967.579 kb on + strand, within ECD_03757 at 3967.580 kb on - strand, within ECD_03757 at 3967.582 kb on + strand, within ECD_03757 at 3967.724 kb on + strand, within ECD_03757 at 3967.724 kb on + strand, within ECD_03757 at 3968.117 kb on + strand, within ECD_03758 at 3968.218 kb on - strand, within ECD_03758 at 3968.239 kb on + strand, within ECD_03758 at 3968.239 kb on + strand, within ECD_03758 at 3968.240 kb on - strand, within ECD_03758 at 3968.268 kb on + strand, within ECD_03758 at 3968.273 kb on - strand, within ECD_03758 at 3968.546 kb on + strand, within ECD_03758 at 3968.614 kb on - strand, within ECD_03758
Per-strain Table
Position Strand Gene LocusTag Fraction Bas30 remove 3,966,290 - ECD_03756 0.65 -0.2 3,966,370 + ECD_03756 0.69 -1.1 3,966,414 + ECD_03756 0.72 +0.4 3,966,414 + ECD_03756 0.72 +0.3 3,966,415 - ECD_03756 0.72 -0.5 3,966,415 - ECD_03756 0.72 +0.8 3,966,500 + ECD_03756 0.76 -0.6 3,966,528 + ECD_03756 0.78 -2.3 3,966,586 + ECD_03756 0.81 -1.6 3,966,685 + ECD_03756 0.87 -0.4 3,966,708 + ECD_03756 0.88 +0.6 3,966,709 - ECD_03756 0.88 -0.7 3,966,837 + -1.6 3,966,927 - +0.6 3,967,007 + +0.2 3,967,008 - -1.5 3,967,016 + -0.3 3,967,016 + +1.0 3,967,016 + -0.1 3,967,018 + +0.5 3,967,058 - +0.6 3,967,072 - +0.5 3,967,140 - -0.0 3,967,168 - +0.4 3,967,270 + ECD_03757 0.18 +0.5 3,967,370 - ECD_03757 0.32 -0.4 3,967,556 - ECD_03757 0.58 +0.0 3,967,578 - ECD_03757 0.61 -0.3 3,967,578 - ECD_03757 0.61 +0.4 3,967,579 + ECD_03757 0.61 +0.2 3,967,579 + ECD_03757 0.61 +0.1 3,967,579 + ECD_03757 0.61 -0.9 3,967,580 - ECD_03757 0.61 +0.6 3,967,582 + ECD_03757 0.61 +0.3 3,967,724 + ECD_03757 0.81 +0.8 3,967,724 + ECD_03757 0.81 -0.0 3,968,117 + ECD_03758 0.26 -0.5 3,968,218 - ECD_03758 0.36 -0.0 3,968,239 + ECD_03758 0.38 -0.0 3,968,239 + ECD_03758 0.38 -0.5 3,968,240 - ECD_03758 0.38 +0.1 3,968,268 + ECD_03758 0.41 +0.1 3,968,273 - ECD_03758 0.42 -0.5 3,968,546 + ECD_03758 0.70 -1.1 3,968,614 - ECD_03758 0.77 +0.4
Or see this region's nucleotide sequence