Experiment: Bas30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03075 and ECD_03076 are separated by 95 nucleotides ECD_03076 and ECD_03077 are separated by 581 nucleotides
ECD_03075: ECD_03075 - aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB, at 3,219,189 to 3,221,525
_03075
ECD_03076: ECD_03076 - putative Fe-S oxidoreductase, Radical SAM superfamily protein, at 3,221,621 to 3,222,550
_03076
ECD_03077: ECD_03077 - glutamate synthase, large subunit, at 3,223,132 to 3,227,685
_03077
Position (kb)
3221
3222
3223 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3220.641 kb on - strand, within ECD_03075 at 3220.777 kb on + strand, within ECD_03075 at 3220.778 kb on - strand, within ECD_03075 at 3220.781 kb on - strand, within ECD_03075 at 3220.844 kb on - strand, within ECD_03075 at 3220.860 kb on - strand, within ECD_03075 at 3221.055 kb on + strand, within ECD_03075 at 3221.193 kb on - strand, within ECD_03075 at 3221.314 kb on + strand at 3221.315 kb on - strand at 3221.361 kb on - strand at 3221.413 kb on - strand at 3221.473 kb on - strand at 3221.494 kb on + strand at 3221.494 kb on + strand at 3221.495 kb on - strand at 3221.497 kb on + strand at 3221.497 kb on + strand at 3221.498 kb on - strand at 3221.498 kb on - strand at 3221.558 kb on - strand at 3221.577 kb on + strand at 3221.577 kb on + strand at 3221.577 kb on + strand at 3221.577 kb on + strand at 3221.578 kb on - strand at 3221.578 kb on - strand at 3221.578 kb on - strand at 3221.578 kb on - strand at 3221.622 kb on + strand at 3221.778 kb on + strand, within ECD_03076 at 3221.778 kb on + strand, within ECD_03076 at 3221.779 kb on - strand, within ECD_03076 at 3221.779 kb on - strand, within ECD_03076 at 3221.779 kb on - strand, within ECD_03076 at 3221.779 kb on - strand, within ECD_03076 at 3221.829 kb on + strand, within ECD_03076 at 3221.829 kb on + strand, within ECD_03076 at 3221.830 kb on - strand, within ECD_03076 at 3221.899 kb on + strand, within ECD_03076 at 3221.918 kb on + strand, within ECD_03076 at 3221.999 kb on + strand, within ECD_03076 at 3221.999 kb on + strand, within ECD_03076 at 3221.999 kb on + strand, within ECD_03076 at 3222.000 kb on - strand, within ECD_03076 at 3222.000 kb on - strand, within ECD_03076 at 3222.000 kb on - strand, within ECD_03076 at 3222.046 kb on + strand, within ECD_03076 at 3222.046 kb on + strand, within ECD_03076 at 3222.046 kb on + strand, within ECD_03076 at 3222.151 kb on + strand, within ECD_03076 at 3222.151 kb on + strand, within ECD_03076 at 3222.151 kb on + strand, within ECD_03076 at 3222.151 kb on + strand, within ECD_03076 at 3222.152 kb on - strand, within ECD_03076 at 3222.224 kb on - strand, within ECD_03076 at 3222.250 kb on - strand, within ECD_03076 at 3222.250 kb on - strand, within ECD_03076 at 3222.250 kb on - strand, within ECD_03076 at 3222.253 kb on + strand, within ECD_03076 at 3222.253 kb on + strand, within ECD_03076 at 3222.253 kb on + strand, within ECD_03076 at 3222.253 kb on + strand, within ECD_03076 at 3222.253 kb on + strand, within ECD_03076 at 3222.254 kb on - strand, within ECD_03076 at 3222.254 kb on - strand, within ECD_03076 at 3222.254 kb on - strand, within ECD_03076 at 3222.254 kb on - strand, within ECD_03076 at 3222.254 kb on - strand, within ECD_03076 at 3222.254 kb on - strand, within ECD_03076 at 3222.290 kb on - strand, within ECD_03076 at 3222.291 kb on + strand, within ECD_03076 at 3222.291 kb on + strand, within ECD_03076 at 3222.312 kb on + strand, within ECD_03076 at 3222.313 kb on - strand, within ECD_03076 at 3222.313 kb on - strand, within ECD_03076 at 3222.332 kb on + strand, within ECD_03076 at 3222.407 kb on - strand, within ECD_03076 at 3222.482 kb on - strand at 3222.482 kb on - strand at 3222.482 kb on - strand at 3222.482 kb on - strand at 3222.482 kb on - strand at 3222.526 kb on + strand at 3222.526 kb on + strand at 3222.527 kb on - strand at 3222.533 kb on + strand at 3222.845 kb on - strand at 3222.973 kb on + strand at 3222.974 kb on - strand at 3222.974 kb on - strand at 3222.985 kb on - strand at 3223.048 kb on + strand at 3223.052 kb on + strand at 3223.082 kb on + strand at 3223.224 kb on + strand at 3223.224 kb on + strand at 3223.224 kb on + strand at 3223.224 kb on + strand at 3223.231 kb on + strand at 3223.236 kb on + strand at 3223.254 kb on + strand at 3223.283 kb on + strand at 3223.283 kb on + strand at 3223.283 kb on + strand at 3223.283 kb on + strand at 3223.283 kb on + strand at 3223.284 kb on - strand at 3223.284 kb on - strand at 3223.307 kb on + strand at 3223.307 kb on + strand at 3223.314 kb on + strand at 3223.323 kb on - strand at 3223.465 kb on + strand at 3223.481 kb on + strand at 3223.481 kb on + strand at 3223.482 kb on - strand at 3223.492 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas30 remove 3,220,641 - ECD_03075 0.62 -0.1 3,220,777 + ECD_03075 0.68 +1.5 3,220,778 - ECD_03075 0.68 +1.5 3,220,781 - ECD_03075 0.68 +0.5 3,220,844 - ECD_03075 0.71 -2.0 3,220,860 - ECD_03075 0.72 -1.1 3,221,055 + ECD_03075 0.80 +1.5 3,221,193 - ECD_03075 0.86 +1.5 3,221,314 + +2.5 3,221,315 - +1.5 3,221,361 - +0.9 3,221,413 - +0.7 3,221,473 - +0.6 3,221,494 + +0.5 3,221,494 + -0.5 3,221,495 - +0.3 3,221,497 + +1.5 3,221,497 + -0.3 3,221,498 - +0.9 3,221,498 - -0.1 3,221,558 - +0.2 3,221,577 + -0.1 3,221,577 + +0.1 3,221,577 + +0.5 3,221,577 + +0.5 3,221,578 - +0.9 3,221,578 - +1.2 3,221,578 - +0.1 3,221,578 - +0.8 3,221,622 + -0.5 3,221,778 + ECD_03076 0.17 +0.8 3,221,778 + ECD_03076 0.17 +0.8 3,221,779 - ECD_03076 0.17 +0.1 3,221,779 - ECD_03076 0.17 +0.5 3,221,779 - ECD_03076 0.17 +1.2 3,221,779 - ECD_03076 0.17 -0.6 3,221,829 + ECD_03076 0.22 +0.5 3,221,829 + ECD_03076 0.22 +0.8 3,221,830 - ECD_03076 0.22 +1.4 3,221,899 + ECD_03076 0.30 +0.1 3,221,918 + ECD_03076 0.32 -0.1 3,221,999 + ECD_03076 0.41 +0.8 3,221,999 + ECD_03076 0.41 +0.9 3,221,999 + ECD_03076 0.41 +0.9 3,222,000 - ECD_03076 0.41 +0.8 3,222,000 - ECD_03076 0.41 +0.4 3,222,000 - ECD_03076 0.41 +0.4 3,222,046 + ECD_03076 0.46 +0.8 3,222,046 + ECD_03076 0.46 +0.9 3,222,046 + ECD_03076 0.46 -0.6 3,222,151 + ECD_03076 0.57 +0.7 3,222,151 + ECD_03076 0.57 +0.8 3,222,151 + ECD_03076 0.57 -0.1 3,222,151 + ECD_03076 0.57 +0.0 3,222,152 - ECD_03076 0.57 -1.5 3,222,224 - ECD_03076 0.65 -1.0 3,222,250 - ECD_03076 0.68 +0.6 3,222,250 - ECD_03076 0.68 -0.3 3,222,250 - ECD_03076 0.68 +0.9 3,222,253 + ECD_03076 0.68 +1.4 3,222,253 + ECD_03076 0.68 +0.4 3,222,253 + ECD_03076 0.68 +0.3 3,222,253 + ECD_03076 0.68 +0.2 3,222,253 + ECD_03076 0.68 -0.5 3,222,254 - ECD_03076 0.68 +0.5 3,222,254 - ECD_03076 0.68 -0.2 3,222,254 - ECD_03076 0.68 +0.4 3,222,254 - ECD_03076 0.68 -0.8 3,222,254 - ECD_03076 0.68 +0.5 3,222,254 - ECD_03076 0.68 +1.2 3,222,290 - ECD_03076 0.72 +0.0 3,222,291 + ECD_03076 0.72 +0.7 3,222,291 + ECD_03076 0.72 +0.5 3,222,312 + ECD_03076 0.74 -0.4 3,222,313 - ECD_03076 0.74 -0.4 3,222,313 - ECD_03076 0.74 -0.3 3,222,332 + ECD_03076 0.76 -0.8 3,222,407 - ECD_03076 0.85 +0.4 3,222,482 - -0.6 3,222,482 - -0.4 3,222,482 - +0.4 3,222,482 - +0.4 3,222,482 - +0.0 3,222,526 + -0.0 3,222,526 + +0.4 3,222,527 - -0.5 3,222,533 + +0.4 3,222,845 - +0.7 3,222,973 + +0.2 3,222,974 - +0.3 3,222,974 - +0.1 3,222,985 - +1.1 3,223,048 + +1.0 3,223,052 + -0.9 3,223,082 + +0.0 3,223,224 + +0.2 3,223,224 + +0.3 3,223,224 + +0.5 3,223,224 + +0.7 3,223,231 + +0.0 3,223,236 + +0.1 3,223,254 + +0.2 3,223,283 + +0.1 3,223,283 + -0.2 3,223,283 + -0.0 3,223,283 + +2.1 3,223,283 + +0.2 3,223,284 - -0.2 3,223,284 - +0.6 3,223,307 + +1.0 3,223,307 + +0.6 3,223,314 + -0.5 3,223,323 - +0.8 3,223,465 + +1.0 3,223,481 + +0.5 3,223,481 + +0.1 3,223,482 - +0.1 3,223,492 - +2.0
Or see this region's nucleotide sequence