Strain Fitness in Escherichia coli BL21 around ECD_02215

Experiment: Bas30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02214 and ECD_02215 are separated by 919 nucleotidesECD_02215 and ECD_02216 are separated by 83 nucleotidesECD_02216 and ECD_02217 are separated by 58 nucleotides ECD_02214: ECD_02214 - transcriptional repressor of flagellar, motility and chemotaxis genes, at 2,292,955 to 2,293,893 _02214 ECD_02215: ECD_02215 - glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase, at 2,294,813 to 2,296,030 _02215 ECD_02216: ECD_02216 - 5'-nucleotidase, at 2,296,114 to 2,296,713 _02216 ECD_02217: ECD_02217 - putative transporter, at 2,296,772 to 2,298,604 _02217 Position (kb) 2294 2295 2296 2297Strain fitness (log2 ratio) -2 -1 0 1at 2293.867 kb on - strandat 2293.889 kb on - strandat 2293.896 kb on - strandat 2293.896 kb on - strandat 2293.896 kb on - strandat 2294.128 kb on + strandat 2294.154 kb on - strandat 2294.216 kb on - strandat 2294.749 kb on + strandat 2294.760 kb on - strandat 2294.855 kb on + strandat 2294.988 kb on + strand, within ECD_02215at 2295.065 kb on + strand, within ECD_02215at 2295.107 kb on + strand, within ECD_02215at 2295.248 kb on + strand, within ECD_02215at 2295.249 kb on - strand, within ECD_02215at 2295.316 kb on + strand, within ECD_02215at 2295.335 kb on - strand, within ECD_02215at 2295.346 kb on + strand, within ECD_02215at 2295.347 kb on - strand, within ECD_02215at 2295.682 kb on - strand, within ECD_02215at 2295.682 kb on - strand, within ECD_02215at 2295.769 kb on + strand, within ECD_02215at 2295.809 kb on + strand, within ECD_02215at 2295.809 kb on + strand, within ECD_02215at 2295.810 kb on - strand, within ECD_02215at 2295.811 kb on + strand, within ECD_02215at 2295.811 kb on + strand, within ECD_02215at 2295.811 kb on + strand, within ECD_02215at 2295.811 kb on + strand, within ECD_02215at 2295.811 kb on + strand, within ECD_02215at 2295.812 kb on - strand, within ECD_02215at 2295.974 kb on - strandat 2296.100 kb on + strandat 2296.100 kb on + strandat 2296.101 kb on - strandat 2296.104 kb on + strandat 2296.104 kb on + strandat 2296.105 kb on - strandat 2296.251 kb on + strand, within ECD_02216at 2296.391 kb on - strand, within ECD_02216at 2296.456 kb on - strand, within ECD_02216at 2296.655 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas30
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2,293,867 - -1.3
2,293,889 - -2.4
2,293,896 - +0.1
2,293,896 - +0.8
2,293,896 - -2.1
2,294,128 + -0.7
2,294,154 - +0.3
2,294,216 - -0.5
2,294,749 + -0.4
2,294,760 - -0.8
2,294,855 + +0.2
2,294,988 + ECD_02215 0.14 +1.0
2,295,065 + ECD_02215 0.21 +0.5
2,295,107 + ECD_02215 0.24 -0.1
2,295,248 + ECD_02215 0.36 +1.0
2,295,249 - ECD_02215 0.36 +0.0
2,295,316 + ECD_02215 0.41 -0.3
2,295,335 - ECD_02215 0.43 -0.5
2,295,346 + ECD_02215 0.44 +0.4
2,295,347 - ECD_02215 0.44 +1.4
2,295,682 - ECD_02215 0.71 +0.2
2,295,682 - ECD_02215 0.71 -0.4
2,295,769 + ECD_02215 0.78 -0.2
2,295,809 + ECD_02215 0.82 +0.7
2,295,809 + ECD_02215 0.82 -0.3
2,295,810 - ECD_02215 0.82 +0.8
2,295,811 + ECD_02215 0.82 -0.0
2,295,811 + ECD_02215 0.82 -0.3
2,295,811 + ECD_02215 0.82 +0.3
2,295,811 + ECD_02215 0.82 +0.6
2,295,811 + ECD_02215 0.82 -1.2
2,295,812 - ECD_02215 0.82 -0.5
2,295,974 - +0.1
2,296,100 + -0.1
2,296,100 + -0.4
2,296,101 - +0.5
2,296,104 + -0.9
2,296,104 + -0.4
2,296,105 - +0.4
2,296,251 + ECD_02216 0.23 +0.2
2,296,391 - ECD_02216 0.46 +0.1
2,296,456 - ECD_02216 0.57 -0.2
2,296,655 + +0.0

Or see this region's nucleotide sequence