Experiment: Bas30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02214 and ECD_02215 are separated by 919 nucleotides ECD_02215 and ECD_02216 are separated by 83 nucleotides ECD_02216 and ECD_02217 are separated by 58 nucleotides
ECD_02214: ECD_02214 - transcriptional repressor of flagellar, motility and chemotaxis genes, at 2,292,955 to 2,293,893
_02214
ECD_02215: ECD_02215 - glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase, at 2,294,813 to 2,296,030
_02215
ECD_02216: ECD_02216 - 5'-nucleotidase, at 2,296,114 to 2,296,713
_02216
ECD_02217: ECD_02217 - putative transporter, at 2,296,772 to 2,298,604
_02217
Position (kb)
2294
2295
2296
2297 Strain fitness (log2 ratio)
-2
-1
0
1 at 2293.867 kb on - strand at 2293.889 kb on - strand at 2293.896 kb on - strand at 2293.896 kb on - strand at 2293.896 kb on - strand at 2294.128 kb on + strand at 2294.154 kb on - strand at 2294.216 kb on - strand at 2294.749 kb on + strand at 2294.760 kb on - strand at 2294.855 kb on + strand at 2294.988 kb on + strand, within ECD_02215 at 2295.065 kb on + strand, within ECD_02215 at 2295.107 kb on + strand, within ECD_02215 at 2295.248 kb on + strand, within ECD_02215 at 2295.249 kb on - strand, within ECD_02215 at 2295.316 kb on + strand, within ECD_02215 at 2295.335 kb on - strand, within ECD_02215 at 2295.346 kb on + strand, within ECD_02215 at 2295.347 kb on - strand, within ECD_02215 at 2295.682 kb on - strand, within ECD_02215 at 2295.682 kb on - strand, within ECD_02215 at 2295.769 kb on + strand, within ECD_02215 at 2295.809 kb on + strand, within ECD_02215 at 2295.809 kb on + strand, within ECD_02215 at 2295.810 kb on - strand, within ECD_02215 at 2295.811 kb on + strand, within ECD_02215 at 2295.811 kb on + strand, within ECD_02215 at 2295.811 kb on + strand, within ECD_02215 at 2295.811 kb on + strand, within ECD_02215 at 2295.811 kb on + strand, within ECD_02215 at 2295.812 kb on - strand, within ECD_02215 at 2295.974 kb on - strand at 2296.100 kb on + strand at 2296.100 kb on + strand at 2296.101 kb on - strand at 2296.104 kb on + strand at 2296.104 kb on + strand at 2296.105 kb on - strand at 2296.251 kb on + strand, within ECD_02216 at 2296.391 kb on - strand, within ECD_02216 at 2296.456 kb on - strand, within ECD_02216 at 2296.655 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas30 remove 2,293,867 - -1.3 2,293,889 - -2.4 2,293,896 - +0.1 2,293,896 - +0.8 2,293,896 - -2.1 2,294,128 + -0.7 2,294,154 - +0.3 2,294,216 - -0.5 2,294,749 + -0.4 2,294,760 - -0.8 2,294,855 + +0.2 2,294,988 + ECD_02215 0.14 +1.0 2,295,065 + ECD_02215 0.21 +0.5 2,295,107 + ECD_02215 0.24 -0.1 2,295,248 + ECD_02215 0.36 +1.0 2,295,249 - ECD_02215 0.36 +0.0 2,295,316 + ECD_02215 0.41 -0.3 2,295,335 - ECD_02215 0.43 -0.5 2,295,346 + ECD_02215 0.44 +0.4 2,295,347 - ECD_02215 0.44 +1.4 2,295,682 - ECD_02215 0.71 +0.2 2,295,682 - ECD_02215 0.71 -0.4 2,295,769 + ECD_02215 0.78 -0.2 2,295,809 + ECD_02215 0.82 +0.7 2,295,809 + ECD_02215 0.82 -0.3 2,295,810 - ECD_02215 0.82 +0.8 2,295,811 + ECD_02215 0.82 -0.0 2,295,811 + ECD_02215 0.82 -0.3 2,295,811 + ECD_02215 0.82 +0.3 2,295,811 + ECD_02215 0.82 +0.6 2,295,811 + ECD_02215 0.82 -1.2 2,295,812 - ECD_02215 0.82 -0.5 2,295,974 - +0.1 2,296,100 + -0.1 2,296,100 + -0.4 2,296,101 - +0.5 2,296,104 + -0.9 2,296,104 + -0.4 2,296,105 - +0.4 2,296,251 + ECD_02216 0.23 +0.2 2,296,391 - ECD_02216 0.46 +0.1 2,296,456 - ECD_02216 0.57 -0.2 2,296,655 + +0.0
Or see this region's nucleotide sequence