Strain Fitness in Escherichia coli BL21 around ECD_02212

Experiment: Bas30

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02211 and ECD_02212 are separated by 93 nucleotidesECD_02212 and ECD_02213 are separated by 15 nucleotides ECD_02211: ECD_02211 - NADH:ubiquinone oxidoreductase, fused CD subunit, at 2,289,307 to 2,291,109 _02211 ECD_02212: ECD_02212 - NADH:ubiquinone oxidoreductase, chain B, at 2,291,203 to 2,291,865 _02212 ECD_02213: ECD_02213 - NADH:ubiquinone oxidoreductase, membrane subunit A, at 2,291,881 to 2,292,324 _02213 Position (kb) 2291 2292Strain fitness (log2 ratio) -2 -1 0 1at 2290.250 kb on + strand, within ECD_02211at 2290.298 kb on + strand, within ECD_02211at 2290.298 kb on + strand, within ECD_02211at 2290.298 kb on + strand, within ECD_02211at 2290.299 kb on - strand, within ECD_02211at 2290.299 kb on - strand, within ECD_02211at 2290.307 kb on + strand, within ECD_02211at 2290.308 kb on - strand, within ECD_02211at 2290.669 kb on - strand, within ECD_02211at 2290.879 kb on + strand, within ECD_02211at 2291.097 kb on + strandat 2291.142 kb on - strandat 2291.162 kb on - strandat 2291.229 kb on + strandat 2291.230 kb on - strandat 2291.230 kb on - strandat 2291.373 kb on - strand, within ECD_02212at 2291.403 kb on + strand, within ECD_02212at 2291.405 kb on + strand, within ECD_02212at 2291.405 kb on + strand, within ECD_02212at 2291.406 kb on - strand, within ECD_02212at 2291.406 kb on - strand, within ECD_02212at 2291.406 kb on - strand, within ECD_02212at 2291.406 kb on - strand, within ECD_02212at 2291.455 kb on - strand, within ECD_02212at 2291.460 kb on - strand, within ECD_02212at 2291.460 kb on - strand, within ECD_02212at 2291.460 kb on - strand, within ECD_02212at 2291.460 kb on - strand, within ECD_02212at 2291.460 kb on - strand, within ECD_02212at 2291.463 kb on + strand, within ECD_02212at 2291.463 kb on + strand, within ECD_02212at 2291.525 kb on + strand, within ECD_02212at 2291.526 kb on - strand, within ECD_02212at 2291.526 kb on - strand, within ECD_02212at 2291.612 kb on - strand, within ECD_02212at 2291.695 kb on - strand, within ECD_02212at 2291.727 kb on + strand, within ECD_02212at 2291.856 kb on + strandat 2291.856 kb on + strandat 2291.856 kb on + strandat 2291.857 kb on - strandat 2291.857 kb on - strandat 2291.857 kb on - strandat 2291.858 kb on + strandat 2291.922 kb on + strandat 2291.979 kb on - strand, within ECD_02213at 2292.330 kb on - strandat 2292.330 kb on - strandat 2292.542 kb on + strandat 2292.584 kb on + strandat 2292.584 kb on + strandat 2292.585 kb on - strandat 2292.585 kb on - strandat 2292.851 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas30
remove
2,290,250 + ECD_02211 0.52 -1.1
2,290,298 + ECD_02211 0.55 -0.4
2,290,298 + ECD_02211 0.55 +1.2
2,290,298 + ECD_02211 0.55 +0.8
2,290,299 - ECD_02211 0.55 -1.1
2,290,299 - ECD_02211 0.55 -0.2
2,290,307 + ECD_02211 0.55 -1.4
2,290,308 - ECD_02211 0.56 -0.6
2,290,669 - ECD_02211 0.76 -0.3
2,290,879 + ECD_02211 0.87 -2.1
2,291,097 + -1.4
2,291,142 - -0.1
2,291,162 - -0.9
2,291,229 + +0.1
2,291,230 - -0.4
2,291,230 - -0.5
2,291,373 - ECD_02212 0.26 -1.1
2,291,403 + ECD_02212 0.30 -0.4
2,291,405 + ECD_02212 0.30 -1.2
2,291,405 + ECD_02212 0.30 +0.8
2,291,406 - ECD_02212 0.31 -1.1
2,291,406 - ECD_02212 0.31 -2.1
2,291,406 - ECD_02212 0.31 -0.1
2,291,406 - ECD_02212 0.31 -1.1
2,291,455 - ECD_02212 0.38 -2.2
2,291,460 - ECD_02212 0.39 -1.1
2,291,460 - ECD_02212 0.39 -1.6
2,291,460 - ECD_02212 0.39 -1.5
2,291,460 - ECD_02212 0.39 -1.1
2,291,460 - ECD_02212 0.39 -0.4
2,291,463 + ECD_02212 0.39 -0.2
2,291,463 + ECD_02212 0.39 -1.2
2,291,525 + ECD_02212 0.49 +0.2
2,291,526 - ECD_02212 0.49 +0.6
2,291,526 - ECD_02212 0.49 -0.7
2,291,612 - ECD_02212 0.62 -1.1
2,291,695 - ECD_02212 0.74 -0.6
2,291,727 + ECD_02212 0.79 -0.8
2,291,856 + +0.5
2,291,856 + -1.2
2,291,856 + -1.5
2,291,857 - -0.9
2,291,857 - -0.7
2,291,857 - -0.9
2,291,858 + -0.8
2,291,922 + -1.2
2,291,979 - ECD_02213 0.22 -1.9
2,292,330 - -1.2
2,292,330 - -0.6
2,292,542 + +0.1
2,292,584 + +0.2
2,292,584 + -0.1
2,292,585 - +0.3
2,292,585 - -0.4
2,292,851 - -0.6

Or see this region's nucleotide sequence