Strain Fitness in Escherichia coli BL21 around ECD_02112

Experiment: Bas30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02110 and ECD_02111 are separated by 3 nucleotidesECD_02111 and ECD_02112 are separated by 332 nucleotidesECD_02112 and ECD_02113 are separated by 27 nucleotidesECD_02113 and ECD_02114 are separated by 148 nucleotides ECD_02110: ECD_02110 - microcin C ABC transporter ATPase, at 2,171,149 to 2,172,738 _02110 ECD_02111: ECD_02111 - uncharacterized protein, at 2,172,742 to 2,173,086 _02111 ECD_02112: ECD_02112 - bicyclomycin/cysteine/sulfonamide efflux transporter, at 2,173,419 to 2,174,609 _02112 ECD_02113: ECD_02113 - 16S rRNA pseudouridine(516) synthase, at 2,174,637 to 2,175,332 _02113 ECD_02114: ECD_02114 - putative ATP-dependent DNA or RNA helicase, at 2,175,481 to 2,177,241 _02114 Position (kb) 2173 2174 2175Strain fitness (log2 ratio) -1 0 1 2at 2172.448 kb on - strand, within ECD_02110at 2172.468 kb on - strand, within ECD_02110at 2172.468 kb on - strand, within ECD_02110at 2172.468 kb on - strand, within ECD_02110at 2172.624 kb on - strandat 2172.642 kb on - strandat 2172.712 kb on - strandat 2172.723 kb on - strandat 2172.756 kb on - strandat 2172.756 kb on - strandat 2172.910 kb on - strand, within ECD_02111at 2172.910 kb on - strand, within ECD_02111at 2172.912 kb on - strand, within ECD_02111at 2172.931 kb on - strand, within ECD_02111at 2172.931 kb on - strand, within ECD_02111at 2172.931 kb on - strand, within ECD_02111at 2173.162 kb on - strandat 2173.223 kb on - strandat 2173.255 kb on - strandat 2173.255 kb on - strandat 2173.255 kb on - strandat 2173.255 kb on - strandat 2173.290 kb on - strandat 2173.341 kb on + strandat 2173.416 kb on - strandat 2173.552 kb on - strand, within ECD_02112at 2173.805 kb on + strand, within ECD_02112at 2173.958 kb on - strand, within ECD_02112at 2173.974 kb on - strand, within ECD_02112at 2173.998 kb on - strand, within ECD_02112at 2174.010 kb on - strand, within ECD_02112at 2174.117 kb on - strand, within ECD_02112at 2174.417 kb on - strand, within ECD_02112at 2174.422 kb on - strand, within ECD_02112at 2174.448 kb on - strand, within ECD_02112at 2174.450 kb on - strand, within ECD_02112at 2174.450 kb on - strand, within ECD_02112at 2174.524 kb on + strandat 2174.524 kb on + strandat 2174.525 kb on - strandat 2174.525 kb on - strandat 2174.525 kb on - strandat 2174.525 kb on - strandat 2174.525 kb on - strandat 2174.525 kb on - strandat 2174.529 kb on - strandat 2174.709 kb on - strand, within ECD_02113at 2174.721 kb on - strand, within ECD_02113at 2174.914 kb on - strand, within ECD_02113at 2174.939 kb on - strand, within ECD_02113at 2174.970 kb on - strand, within ECD_02113at 2175.122 kb on - strand, within ECD_02113at 2175.148 kb on + strand, within ECD_02113at 2175.227 kb on + strand, within ECD_02113at 2175.403 kb on - strandat 2175.415 kb on + strandat 2175.450 kb on + strandat 2175.450 kb on + strandat 2175.470 kb on + strandat 2175.588 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas30
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2,172,448 - ECD_02110 0.82 +2.1
2,172,468 - ECD_02110 0.83 -0.8
2,172,468 - ECD_02110 0.83 -0.7
2,172,468 - ECD_02110 0.83 -0.1
2,172,624 - -0.1
2,172,642 - +0.4
2,172,712 - +0.4
2,172,723 - +0.9
2,172,756 - +0.1
2,172,756 - +0.6
2,172,910 - ECD_02111 0.49 -0.0
2,172,910 - ECD_02111 0.49 -0.4
2,172,912 - ECD_02111 0.49 +1.2
2,172,931 - ECD_02111 0.55 +0.7
2,172,931 - ECD_02111 0.55 -1.2
2,172,931 - ECD_02111 0.55 +0.2
2,173,162 - -1.0
2,173,223 - +0.0
2,173,255 - +0.8
2,173,255 - -0.2
2,173,255 - +0.4
2,173,255 - -0.1
2,173,290 - -0.3
2,173,341 + -0.3
2,173,416 - -0.3
2,173,552 - ECD_02112 0.11 -0.7
2,173,805 + ECD_02112 0.32 +0.7
2,173,958 - ECD_02112 0.45 +1.6
2,173,974 - ECD_02112 0.47 +0.7
2,173,998 - ECD_02112 0.49 +0.4
2,174,010 - ECD_02112 0.50 -0.1
2,174,117 - ECD_02112 0.59 +0.3
2,174,417 - ECD_02112 0.84 +0.4
2,174,422 - ECD_02112 0.84 +0.5
2,174,448 - ECD_02112 0.86 -0.0
2,174,450 - ECD_02112 0.87 -0.7
2,174,450 - ECD_02112 0.87 +0.8
2,174,524 + -0.2
2,174,524 + +0.9
2,174,525 - -1.1
2,174,525 - +1.4
2,174,525 - +1.4
2,174,525 - -0.7
2,174,525 - -0.4
2,174,525 - -1.0
2,174,529 - +0.3
2,174,709 - ECD_02113 0.10 +0.5
2,174,721 - ECD_02113 0.12 +0.3
2,174,914 - ECD_02113 0.40 -0.1
2,174,939 - ECD_02113 0.43 +0.2
2,174,970 - ECD_02113 0.48 +0.2
2,175,122 - ECD_02113 0.70 +0.5
2,175,148 + ECD_02113 0.73 -0.2
2,175,227 + ECD_02113 0.85 +2.0
2,175,403 - -0.4
2,175,415 + -1.1
2,175,450 + +0.0
2,175,450 + +0.5
2,175,470 + +1.3
2,175,588 + -0.4

Or see this region's nucleotide sequence