Strain Fitness in Escherichia coli BL21 around ECD_01910

Experiment: Bas30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01908 and ECD_01909 are separated by 288 nucleotidesECD_01909 and ECD_01910 are separated by 324 nucleotidesECD_01910 and ECD_01911 are separated by 171 nucleotides ECD_01908: ECD_01908 - hypothetical protein, at 1,974,094 to 1,974,504 _01908 ECD_01909: ECD_01909 - hypothetical protein, at 1,974,793 to 1,974,951 _01909 ECD_01910: ECD_01910 - UPF0265 family protein, at 1,975,276 to 1,975,605 _01910 ECD_01911: ECD_01911 - putative transporter, FUSC family inner membrane protein, at 1,975,777 to 1,976,835 _01911 Position (kb) 1975 1976Strain fitness (log2 ratio) -1 0 1at 1974.441 kb on + strand, within ECD_01908at 1974.633 kb on + strandat 1974.759 kb on + strandat 1974.795 kb on - strandat 1975.099 kb on + strandat 1975.330 kb on - strand, within ECD_01910at 1975.371 kb on - strand, within ECD_01910at 1975.612 kb on - strandat 1975.621 kb on - strandat 1975.722 kb on - strandat 1975.860 kb on - strandat 1976.002 kb on + strand, within ECD_01911at 1976.017 kb on - strand, within ECD_01911at 1976.017 kb on - strand, within ECD_01911at 1976.082 kb on - strand, within ECD_01911at 1976.145 kb on - strand, within ECD_01911at 1976.419 kb on - strand, within ECD_01911at 1976.542 kb on + strand, within ECD_01911

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas30
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1,974,441 + ECD_01908 0.84 +0.1
1,974,633 + -0.0
1,974,759 + +0.8
1,974,795 - +0.4
1,975,099 + +0.4
1,975,330 - ECD_01910 0.16 -0.6
1,975,371 - ECD_01910 0.29 -1.2
1,975,612 - -0.9
1,975,621 - -0.7
1,975,722 - -0.9
1,975,860 - +0.8
1,976,002 + ECD_01911 0.21 +0.6
1,976,017 - ECD_01911 0.23 +0.5
1,976,017 - ECD_01911 0.23 -0.3
1,976,082 - ECD_01911 0.29 -0.6
1,976,145 - ECD_01911 0.35 +0.8
1,976,419 - ECD_01911 0.61 -1.3
1,976,542 + ECD_01911 0.72 +0.7

Or see this region's nucleotide sequence