Experiment: Bas30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01897 and ECD_01898 are separated by 101 nucleotides ECD_01898 and ECD_t00036 are separated by 326 nucleotides ECD_t00036 and ECD_01899 are separated by 55 nucleotides
ECD_01897: ECD_01897 - ssuEADCB/tauABCD operon transcriptional activator, at 1,965,112 to 1,966,062
_01897
ECD_01898: ECD_01898 - nitrogen assimilation regulon transcriptional regulator; autorepressor, at 1,966,164 to 1,967,081
_01898
ECD_t00036: ECD_t00036 - tRNA-Asn, at 1,967,408 to 1,967,483
_t00036
ECD_01899: ECD_01899 - L,D-transpeptidase linking Lpp to murein, at 1,967,539 to 1,968,471
_01899
Position (kb)
1966
1967
1968 Strain fitness (log2 ratio)
-1
0
1 at 1965.397 kb on + strand, within ECD_01897 at 1965.558 kb on + strand, within ECD_01897 at 1965.828 kb on + strand, within ECD_01897 at 1966.711 kb on + strand, within ECD_01898 at 1966.712 kb on - strand, within ECD_01898 at 1966.867 kb on - strand, within ECD_01898 at 1967.524 kb on + strand at 1967.524 kb on + strand at 1967.524 kb on + strand at 1967.617 kb on + strand at 1967.762 kb on + strand, within ECD_01899 at 1967.822 kb on + strand, within ECD_01899 at 1967.850 kb on + strand, within ECD_01899 at 1967.895 kb on + strand, within ECD_01899
Per-strain Table
Position Strand Gene LocusTag Fraction Bas30 remove 1,965,397 + ECD_01897 0.30 -1.1 1,965,558 + ECD_01897 0.47 -0.5 1,965,828 + ECD_01897 0.75 +0.3 1,966,711 + ECD_01898 0.60 +0.9 1,966,712 - ECD_01898 0.60 -0.2 1,966,867 - ECD_01898 0.77 +1.4 1,967,524 + +0.1 1,967,524 + +0.3 1,967,524 + -0.5 1,967,617 + -1.1 1,967,762 + ECD_01899 0.24 -1.7 1,967,822 + ECD_01899 0.30 +0.7 1,967,850 + ECD_01899 0.33 +0.3 1,967,895 + ECD_01899 0.38 +1.1
Or see this region's nucleotide sequence