Strain Fitness in Escherichia coli BL21 around ECD_01865

Experiment: Bas30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01864 and ECD_01865 are separated by 6 nucleotidesECD_01865 and ECD_01866 overlap by 26 nucleotidesECD_01866 and ECD_01867 are separated by 166 nucleotides ECD_01864: ECD_01864 - universal stress protein, at 1,924,895 to 1,925,323 _01864 ECD_01865: ECD_01865 - trehalose-6-phosphate synthase, at 1,925,330 to 1,926,754 _01865 ECD_01866: ECD_01866 - trehalose-6-phosphate phosphatase, biosynthetic, at 1,926,729 to 1,927,529 _01866 ECD_01867: ECD_01867 - L-arabinose ABC transporter permease, at 1,927,696 to 1,928,682 _01867 Position (kb) 1925 1926 1927Strain fitness (log2 ratio) -1 0 1at 1925.173 kb on + strand, within ECD_01864at 1925.184 kb on + strand, within ECD_01864at 1925.184 kb on + strand, within ECD_01864at 1925.500 kb on + strand, within ECD_01865at 1925.771 kb on + strand, within ECD_01865at 1925.785 kb on + strand, within ECD_01865at 1925.786 kb on - strand, within ECD_01865at 1926.376 kb on + strand, within ECD_01865at 1926.404 kb on + strand, within ECD_01865at 1926.755 kb on - strandat 1927.102 kb on - strand, within ECD_01866at 1927.247 kb on + strand, within ECD_01866at 1927.248 kb on - strand, within ECD_01866at 1927.248 kb on - strand, within ECD_01866at 1927.395 kb on + strand, within ECD_01866at 1927.410 kb on - strand, within ECD_01866at 1927.588 kb on + strandat 1927.588 kb on + strandat 1927.588 kb on + strandat 1927.589 kb on - strandat 1927.589 kb on - strandat 1927.589 kb on - strandat 1927.589 kb on - strandat 1927.589 kb on - strandat 1927.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas30
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1,925,173 + ECD_01864 0.65 -0.8
1,925,184 + ECD_01864 0.67 -0.2
1,925,184 + ECD_01864 0.67 +0.1
1,925,500 + ECD_01865 0.12 -1.6
1,925,771 + ECD_01865 0.31 +0.6
1,925,785 + ECD_01865 0.32 -0.4
1,925,786 - ECD_01865 0.32 -0.1
1,926,376 + ECD_01865 0.73 +0.2
1,926,404 + ECD_01865 0.75 -0.5
1,926,755 - -1.1
1,927,102 - ECD_01866 0.47 +0.7
1,927,247 + ECD_01866 0.65 +0.4
1,927,248 - ECD_01866 0.65 -0.0
1,927,248 - ECD_01866 0.65 +0.5
1,927,395 + ECD_01866 0.83 +1.1
1,927,410 - ECD_01866 0.85 -0.4
1,927,588 + -0.4
1,927,588 + +0.8
1,927,588 + +1.0
1,927,589 - +0.7
1,927,589 - +0.7
1,927,589 - -0.5
1,927,589 - -1.0
1,927,589 - +0.1
1,927,589 - -0.0

Or see this region's nucleotide sequence