Experiment: Bas30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01864 and ECD_01865 are separated by 6 nucleotides ECD_01865 and ECD_01866 overlap by 26 nucleotides ECD_01866 and ECD_01867 are separated by 166 nucleotides
ECD_01864: ECD_01864 - universal stress protein, at 1,924,895 to 1,925,323
_01864
ECD_01865: ECD_01865 - trehalose-6-phosphate synthase, at 1,925,330 to 1,926,754
_01865
ECD_01866: ECD_01866 - trehalose-6-phosphate phosphatase, biosynthetic, at 1,926,729 to 1,927,529
_01866
ECD_01867: ECD_01867 - L-arabinose ABC transporter permease, at 1,927,696 to 1,928,682
_01867
Position (kb)
1925
1926
1927 Strain fitness (log2 ratio)
-1
0
1 at 1925.173 kb on + strand, within ECD_01864 at 1925.184 kb on + strand, within ECD_01864 at 1925.184 kb on + strand, within ECD_01864 at 1925.500 kb on + strand, within ECD_01865 at 1925.771 kb on + strand, within ECD_01865 at 1925.785 kb on + strand, within ECD_01865 at 1925.786 kb on - strand, within ECD_01865 at 1926.376 kb on + strand, within ECD_01865 at 1926.404 kb on + strand, within ECD_01865 at 1926.755 kb on - strand at 1927.102 kb on - strand, within ECD_01866 at 1927.247 kb on + strand, within ECD_01866 at 1927.248 kb on - strand, within ECD_01866 at 1927.248 kb on - strand, within ECD_01866 at 1927.395 kb on + strand, within ECD_01866 at 1927.410 kb on - strand, within ECD_01866 at 1927.588 kb on + strand at 1927.588 kb on + strand at 1927.588 kb on + strand at 1927.589 kb on - strand at 1927.589 kb on - strand at 1927.589 kb on - strand at 1927.589 kb on - strand at 1927.589 kb on - strand at 1927.589 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas30 remove 1,925,173 + ECD_01864 0.65 -0.8 1,925,184 + ECD_01864 0.67 -0.2 1,925,184 + ECD_01864 0.67 +0.1 1,925,500 + ECD_01865 0.12 -1.6 1,925,771 + ECD_01865 0.31 +0.6 1,925,785 + ECD_01865 0.32 -0.4 1,925,786 - ECD_01865 0.32 -0.1 1,926,376 + ECD_01865 0.73 +0.2 1,926,404 + ECD_01865 0.75 -0.5 1,926,755 - -1.1 1,927,102 - ECD_01866 0.47 +0.7 1,927,247 + ECD_01866 0.65 +0.4 1,927,248 - ECD_01866 0.65 -0.0 1,927,248 - ECD_01866 0.65 +0.5 1,927,395 + ECD_01866 0.83 +1.1 1,927,410 - ECD_01866 0.85 -0.4 1,927,588 + -0.4 1,927,588 + +0.8 1,927,588 + +1.0 1,927,589 - +0.7 1,927,589 - +0.7 1,927,589 - -0.5 1,927,589 - -1.0 1,927,589 - +0.1 1,927,589 - -0.0
Or see this region's nucleotide sequence