Experiment: Bas30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01579 and ECD_01580 overlap by 4 nucleotides ECD_01580 and ECD_01581 are separated by 142 nucleotides
ECD_01579: ECD_01579 - inhibitor of replication at Ter, DNA-binding protein, at 1,629,456 to 1,630,385
_01579
ECD_01580: ECD_01580 - fumarate hydratase (fumarase C),aerobic Class II, at 1,630,382 to 1,631,785
_01580
ECD_01581: ECD_01581 - fumarate hydratase (fumarase A), aerobic Class I, at 1,631,928 to 1,633,574
_01581
Position (kb)
1630
1631
1632 Strain fitness (log2 ratio)
-1
0
1 at 1629.455 kb on + strand at 1629.455 kb on + strand at 1629.553 kb on + strand, within ECD_01579 at 1629.553 kb on + strand, within ECD_01579 at 1629.983 kb on + strand, within ECD_01579 at 1629.983 kb on + strand, within ECD_01579 at 1630.101 kb on + strand, within ECD_01579 at 1630.322 kb on + strand at 1631.061 kb on + strand, within ECD_01580 at 1631.547 kb on - strand, within ECD_01580 at 1632.083 kb on + strand at 1632.084 kb on - strand at 1632.236 kb on - strand, within ECD_01581 at 1632.236 kb on - strand, within ECD_01581 at 1632.542 kb on - strand, within ECD_01581 at 1632.542 kb on - strand, within ECD_01581 at 1632.605 kb on + strand, within ECD_01581 at 1632.606 kb on - strand, within ECD_01581 at 1632.702 kb on - strand, within ECD_01581
Per-strain Table
Position Strand Gene LocusTag Fraction Bas30 remove 1,629,455 + +0.6 1,629,455 + -0.2 1,629,553 + ECD_01579 0.10 -0.3 1,629,553 + ECD_01579 0.10 +0.3 1,629,983 + ECD_01579 0.57 +1.1 1,629,983 + ECD_01579 0.57 -0.4 1,630,101 + ECD_01579 0.69 -1.0 1,630,322 + +0.4 1,631,061 + ECD_01580 0.48 +0.5 1,631,547 - ECD_01580 0.83 -0.9 1,632,083 + -1.1 1,632,084 - +0.3 1,632,236 - ECD_01581 0.19 +0.2 1,632,236 - ECD_01581 0.19 +1.5 1,632,542 - ECD_01581 0.37 +0.3 1,632,542 - ECD_01581 0.37 -0.9 1,632,605 + ECD_01581 0.41 -1.0 1,632,606 - ECD_01581 0.41 -1.5 1,632,702 - ECD_01581 0.47 +1.0
Or see this region's nucleotide sequence