Strain Fitness in Escherichia coli BL21 around ECD_01310

Experiment: Bas30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01308 and ECD_01309 are separated by 243 nucleotidesECD_01309 and ECD_01310 are separated by 49 nucleotides ECD_01308: ECD_01308 - mechanosensitive channel protein, very small conductance, at 1,381,258 to 1,382,289 _01308 ECD_01309: ECD_01309 - DUF2534 family putative inner membrane protein, at 1,382,533 to 1,382,790 _01309 ECD_01310: ECD_01310 - stress-induced protein, at 1,382,840 to 1,383,790 _01310 Position (kb) 1382 1383 1384Strain fitness (log2 ratio) -1 0 1at 1382.404 kb on + strandat 1382.527 kb on + strandat 1382.527 kb on + strandat 1382.645 kb on + strand, within ECD_01309at 1382.653 kb on + strand, within ECD_01309at 1382.689 kb on + strand, within ECD_01309at 1382.721 kb on + strand, within ECD_01309at 1382.965 kb on + strand, within ECD_01310at 1383.527 kb on - strand, within ECD_01310at 1384.007 kb on - strandat 1384.072 kb on - strandat 1384.088 kb on - strandat 1384.172 kb on - strandat 1384.172 kb on - strandat 1384.172 kb on - strandat 1384.172 kb on - strandat 1384.172 kb on - strandat 1384.460 kb on - strandat 1384.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas30
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1,382,404 + -0.3
1,382,527 + +1.7
1,382,527 + -1.6
1,382,645 + ECD_01309 0.43 -1.3
1,382,653 + ECD_01309 0.47 +0.4
1,382,689 + ECD_01309 0.60 -0.1
1,382,721 + ECD_01309 0.73 -0.3
1,382,965 + ECD_01310 0.13 -0.9
1,383,527 - ECD_01310 0.72 +0.1
1,384,007 - +0.1
1,384,072 - -1.0
1,384,088 - -0.3
1,384,172 - +0.5
1,384,172 - -0.8
1,384,172 - +1.1
1,384,172 - -0.0
1,384,172 - +0.2
1,384,460 - -0.3
1,384,460 - -0.5

Or see this region's nucleotide sequence