Experiment: Bas30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01013 and ECD_01014 are separated by 11 nucleotides ECD_01014 and ECD_01015 overlap by 1 nucleotides ECD_01015 and ECD_01016 are separated by 230 nucleotides ECD_01016 and ECD_01017 are separated by 39 nucleotides
ECD_01013: ECD_01013 - putative aminoacrylate deaminase, reactive intermediate detoxification; weak enamine/imine deaminase activity, at 1,076,055 to 1,076,441
_01013
ECD_01014: ECD_01014 - ureidoacrylate amidohydrolase, at 1,076,453 to 1,077,145
_01014
ECD_01015: ECD_01015 - pyrimidine oxygenase, FMN-dependent, at 1,077,145 to 1,078,293
_01015
ECD_01016: ECD_01016 - rut operon transcriptional repressor for, at 1,078,524 to 1,079,162
_01016
ECD_01017: ECD_01017 - fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase, at 1,079,202 to 1,083,164
_01017
Position (kb)
1077
1078
1079 Strain fitness (log2 ratio)
-2
-1
0
1 at 1076.204 kb on + strand, within ECD_01013 at 1076.324 kb on + strand, within ECD_01013 at 1076.325 kb on - strand, within ECD_01013 at 1076.356 kb on + strand, within ECD_01013 at 1076.356 kb on + strand, within ECD_01013 at 1076.356 kb on + strand, within ECD_01013 at 1076.357 kb on - strand, within ECD_01013 at 1076.357 kb on - strand, within ECD_01013 at 1076.848 kb on + strand, within ECD_01014 at 1076.913 kb on + strand, within ECD_01014 at 1076.914 kb on - strand, within ECD_01014 at 1077.038 kb on + strand, within ECD_01014 at 1077.060 kb on + strand, within ECD_01014 at 1077.520 kb on + strand, within ECD_01015 at 1077.520 kb on + strand, within ECD_01015 at 1077.520 kb on + strand, within ECD_01015 at 1077.520 kb on + strand, within ECD_01015 at 1077.520 kb on + strand, within ECD_01015 at 1077.521 kb on - strand, within ECD_01015 at 1077.797 kb on + strand, within ECD_01015 at 1077.830 kb on + strand, within ECD_01015 at 1077.967 kb on + strand, within ECD_01015 at 1079.182 kb on - strand at 1079.273 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas30 remove 1,076,204 + ECD_01013 0.39 -1.8 1,076,324 + ECD_01013 0.70 +0.7 1,076,325 - ECD_01013 0.70 +1.1 1,076,356 + ECD_01013 0.78 +0.6 1,076,356 + ECD_01013 0.78 +0.3 1,076,356 + ECD_01013 0.78 +0.5 1,076,357 - ECD_01013 0.78 +0.4 1,076,357 - ECD_01013 0.78 +0.7 1,076,848 + ECD_01014 0.57 -0.0 1,076,913 + ECD_01014 0.66 +1.0 1,076,914 - ECD_01014 0.67 +1.1 1,077,038 + ECD_01014 0.84 -0.5 1,077,060 + ECD_01014 0.88 +0.6 1,077,520 + ECD_01015 0.33 +1.2 1,077,520 + ECD_01015 0.33 +0.6 1,077,520 + ECD_01015 0.33 -0.5 1,077,520 + ECD_01015 0.33 +1.1 1,077,520 + ECD_01015 0.33 +0.3 1,077,521 - ECD_01015 0.33 -0.6 1,077,797 + ECD_01015 0.57 -0.7 1,077,830 + ECD_01015 0.60 -0.7 1,077,967 + ECD_01015 0.72 +0.2 1,079,182 - -1.5 1,079,273 - +0.0
Or see this region's nucleotide sequence