Strain Fitness in Escherichia coli BL21 around ECD_00591

Experiment: Bas30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00589 and ECD_00590 overlap by 32 nucleotidesECD_00590 and ECD_00591 are separated by 40 nucleotidesECD_00591 and ECD_00592 are separated by 587 nucleotides ECD_00589: ECD_00589 - sensory histidine kinase in two-component regulatory system with CitB, at 612,602 to 614,260 _00589 ECD_00590: ECD_00590 - response regulator in two-component regulatory system with CitA, at 614,229 to 614,909 _00590 ECD_00591: ECD_00591 - anaerobic C4-dicarboxylate transport, at 614,950 to 616,335 _00591 ECD_00592: ECD_00592 - phospholipid:lipid A palmitoyltransferase, at 616,923 to 617,483 _00592 Position (kb) 614 615 616 617Strain fitness (log2 ratio) -2 -1 0 1at 614.139 kb on - strandat 614.139 kb on - strandat 614.143 kb on - strandat 614.161 kb on + strandat 614.162 kb on - strandat 614.207 kb on + strandat 614.228 kb on - strandat 614.249 kb on - strandat 614.297 kb on + strand, within ECD_00590at 614.298 kb on - strand, within ECD_00590at 614.427 kb on - strand, within ECD_00590at 614.518 kb on + strand, within ECD_00590at 614.519 kb on - strand, within ECD_00590at 614.606 kb on + strand, within ECD_00590at 614.607 kb on - strand, within ECD_00590at 614.607 kb on - strand, within ECD_00590at 614.607 kb on - strand, within ECD_00590at 614.664 kb on + strand, within ECD_00590at 614.817 kb on + strand, within ECD_00590at 614.818 kb on - strand, within ECD_00590at 614.893 kb on + strandat 614.893 kb on + strandat 614.893 kb on + strandat 614.893 kb on + strandat 614.893 kb on + strandat 614.893 kb on + strandat 614.894 kb on - strandat 614.895 kb on + strandat 614.895 kb on + strandat 614.895 kb on + strandat 614.896 kb on - strandat 614.915 kb on + strandat 614.915 kb on + strandat 614.947 kb on + strandat 614.951 kb on + strandat 614.951 kb on + strandat 614.952 kb on - strandat 615.355 kb on - strand, within ECD_00591at 615.519 kb on + strand, within ECD_00591at 615.520 kb on - strand, within ECD_00591at 615.729 kb on + strand, within ECD_00591at 615.997 kb on - strand, within ECD_00591at 615.999 kb on + strand, within ECD_00591at 616.000 kb on - strand, within ECD_00591at 616.036 kb on - strand, within ECD_00591at 616.062 kb on - strand, within ECD_00591at 616.243 kb on + strandat 616.244 kb on - strandat 616.286 kb on - strandat 616.881 kb on + strandat 617.206 kb on - strand, within ECD_00592at 617.206 kb on - strand, within ECD_00592

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas30
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614,139 - +0.4
614,139 - +0.5
614,143 - -0.7
614,161 + -0.7
614,162 - +0.6
614,207 + -0.1
614,228 - -1.2
614,249 - +0.6
614,297 + ECD_00590 0.10 -0.5
614,298 - ECD_00590 0.10 -0.4
614,427 - ECD_00590 0.29 +0.6
614,518 + ECD_00590 0.42 -1.4
614,519 - ECD_00590 0.43 +1.3
614,606 + ECD_00590 0.55 -0.3
614,607 - ECD_00590 0.56 +0.0
614,607 - ECD_00590 0.56 -0.7
614,607 - ECD_00590 0.56 -0.2
614,664 + ECD_00590 0.64 -0.7
614,817 + ECD_00590 0.86 +0.0
614,818 - ECD_00590 0.86 -0.6
614,893 + +0.7
614,893 + +0.6
614,893 + -1.8
614,893 + +0.6
614,893 + +0.1
614,893 + +0.6
614,894 - -1.6
614,895 + +0.3
614,895 + -0.0
614,895 + -0.6
614,896 - -0.3
614,915 + +0.1
614,915 + +0.8
614,947 + +0.6
614,951 + -0.9
614,951 + -1.0
614,952 - +0.5
615,355 - ECD_00591 0.29 +0.7
615,519 + ECD_00591 0.41 +0.1
615,520 - ECD_00591 0.41 +0.4
615,729 + ECD_00591 0.56 -1.9
615,997 - ECD_00591 0.76 +0.9
615,999 + ECD_00591 0.76 -0.4
616,000 - ECD_00591 0.76 -0.2
616,036 - ECD_00591 0.78 -0.2
616,062 - ECD_00591 0.80 +0.5
616,243 + +0.9
616,244 - +0.6
616,286 - +0.8
616,881 + -1.1
617,206 - ECD_00592 0.50 +0.9
617,206 - ECD_00592 0.50 +0.8

Or see this region's nucleotide sequence