Strain Fitness in Escherichia coli BL21 around ECD_00128

Experiment: Bas30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00126 and ECD_00127 overlap by 4 nucleotidesECD_00127 and ECD_00128 are separated by 104 nucleotidesECD_00128 and ECD_00129 are separated by 63 nucleotides ECD_00126: ECD_00126 - putative ABC transporter ATPase, at 145,583 to 146,509 _00126 ECD_00127: ECD_00127 - putative ABC transporter permease, at 146,506 to 147,276 _00127 ECD_00128: ECD_00128 - putative PTS Enzyme IIA, at 147,381 to 147,821 _00128 ECD_00129: ECD_00129 - putative polysaccharide deacetylase lipoprotein, at 147,885 to 149,114 _00129 Position (kb) 147 148Strain fitness (log2 ratio) -2 -1 0 1 2at 146.395 kb on - strand, within ECD_00126at 146.398 kb on + strand, within ECD_00126at 146.407 kb on - strand, within ECD_00126at 146.427 kb on + strandat 146.430 kb on + strandat 146.430 kb on + strandat 146.431 kb on - strandat 146.434 kb on + strandat 146.571 kb on + strandat 146.625 kb on + strand, within ECD_00127at 146.652 kb on + strand, within ECD_00127at 146.677 kb on + strand, within ECD_00127at 146.677 kb on + strand, within ECD_00127at 146.678 kb on - strand, within ECD_00127at 146.678 kb on - strand, within ECD_00127at 146.679 kb on + strand, within ECD_00127at 146.732 kb on - strand, within ECD_00127at 146.775 kb on + strand, within ECD_00127at 146.776 kb on - strand, within ECD_00127at 146.776 kb on - strand, within ECD_00127at 146.779 kb on - strand, within ECD_00127at 147.053 kb on - strand, within ECD_00127at 147.131 kb on - strand, within ECD_00127at 147.133 kb on - strand, within ECD_00127at 147.133 kb on - strand, within ECD_00127at 147.133 kb on - strand, within ECD_00127at 147.213 kb on + strandat 147.274 kb on + strandat 147.274 kb on + strandat 147.275 kb on - strandat 147.280 kb on + strandat 147.351 kb on + strandat 147.351 kb on + strandat 147.352 kb on - strandat 147.398 kb on + strandat 147.399 kb on - strandat 147.399 kb on - strandat 147.503 kb on + strand, within ECD_00128at 147.504 kb on - strand, within ECD_00128at 147.506 kb on + strand, within ECD_00128at 147.506 kb on + strand, within ECD_00128at 147.507 kb on - strand, within ECD_00128at 147.580 kb on + strand, within ECD_00128at 147.581 kb on - strand, within ECD_00128at 147.613 kb on + strand, within ECD_00128at 147.617 kb on - strand, within ECD_00128at 147.725 kb on + strand, within ECD_00128at 147.725 kb on + strand, within ECD_00128at 147.726 kb on - strand, within ECD_00128at 147.756 kb on - strand, within ECD_00128at 147.853 kb on - strandat 147.958 kb on - strandat 148.199 kb on - strand, within ECD_00129at 148.202 kb on + strand, within ECD_00129at 148.225 kb on - strand, within ECD_00129at 148.356 kb on + strand, within ECD_00129at 148.357 kb on - strand, within ECD_00129at 148.357 kb on - strand, within ECD_00129at 148.357 kb on - strand, within ECD_00129at 148.408 kb on - strand, within ECD_00129at 148.408 kb on - strand, within ECD_00129at 148.408 kb on - strand, within ECD_00129at 148.415 kb on + strand, within ECD_00129at 148.548 kb on + strand, within ECD_00129at 148.559 kb on + strand, within ECD_00129at 148.560 kb on - strand, within ECD_00129at 148.592 kb on + strand, within ECD_00129at 148.592 kb on + strand, within ECD_00129at 148.626 kb on + strand, within ECD_00129

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas30
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146,395 - ECD_00126 0.88 +0.1
146,398 + ECD_00126 0.88 +0.4
146,407 - ECD_00126 0.89 +0.3
146,427 + -0.6
146,430 + +0.3
146,430 + -0.1
146,431 - +0.3
146,434 + -0.2
146,571 + -0.4
146,625 + ECD_00127 0.15 +1.0
146,652 + ECD_00127 0.19 -0.8
146,677 + ECD_00127 0.22 +0.0
146,677 + ECD_00127 0.22 +0.4
146,678 - ECD_00127 0.22 -1.7
146,678 - ECD_00127 0.22 -1.1
146,679 + ECD_00127 0.22 -0.3
146,732 - ECD_00127 0.29 -0.7
146,775 + ECD_00127 0.35 +0.1
146,776 - ECD_00127 0.35 -0.9
146,776 - ECD_00127 0.35 +1.0
146,779 - ECD_00127 0.35 -1.7
147,053 - ECD_00127 0.71 +1.0
147,131 - ECD_00127 0.81 +0.3
147,133 - ECD_00127 0.81 -0.4
147,133 - ECD_00127 0.81 +0.1
147,133 - ECD_00127 0.81 +0.3
147,213 + -0.2
147,274 + -0.2
147,274 + -0.4
147,275 - +0.6
147,280 + -0.2
147,351 + +0.2
147,351 + +1.3
147,352 - +1.8
147,398 + -0.3
147,399 - +0.1
147,399 - -0.6
147,503 + ECD_00128 0.28 +0.8
147,504 - ECD_00128 0.28 -1.0
147,506 + ECD_00128 0.28 -0.2
147,506 + ECD_00128 0.28 -0.4
147,507 - ECD_00128 0.29 -0.3
147,580 + ECD_00128 0.45 -0.5
147,581 - ECD_00128 0.45 -1.0
147,613 + ECD_00128 0.53 +0.3
147,617 - ECD_00128 0.54 +0.4
147,725 + ECD_00128 0.78 -0.7
147,725 + ECD_00128 0.78 -0.9
147,726 - ECD_00128 0.78 -1.1
147,756 - ECD_00128 0.85 +0.6
147,853 - -0.3
147,958 - +0.1
148,199 - ECD_00129 0.26 -2.6
148,202 + ECD_00129 0.26 -0.5
148,225 - ECD_00129 0.28 +0.5
148,356 + ECD_00129 0.38 -0.4
148,357 - ECD_00129 0.38 +0.5
148,357 - ECD_00129 0.38 -0.5
148,357 - ECD_00129 0.38 -0.2
148,408 - ECD_00129 0.43 +0.8
148,408 - ECD_00129 0.43 -0.3
148,408 - ECD_00129 0.43 -0.4
148,415 + ECD_00129 0.43 +0.2
148,548 + ECD_00129 0.54 +0.1
148,559 + ECD_00129 0.55 +0.4
148,560 - ECD_00129 0.55 +0.6
148,592 + ECD_00129 0.57 -0.8
148,592 + ECD_00129 0.57 +0.0
148,626 + ECD_00129 0.60 -0.4

Or see this region's nucleotide sequence