Strain Fitness in Escherichia coli BL21 around ECD_00040

Experiment: Bas30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00038 and ECD_00039 are separated by 208 nucleotidesECD_00039 and ECD_00040 are separated by 5 nucleotidesECD_00040 and ECD_00041 are separated by 0 nucleotides ECD_00038: ECD_00038 - cai operon transcriptional activator, at 38,372 to 38,767 _00038 ECD_00039: ECD_00039 - stimulator of CaiD and CaiB enzyme activities, at 38,976 to 39,566 _00039 ECD_00040: ECD_00040 - carnitinyl-CoA dehydratase, at 39,572 to 40,465 _00040 ECD_00041: ECD_00041 - putative crotonobetaine/carnitine-CoA ligase, at 40,466 to 42,019 _00041 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1at 38.647 kb on + strand, within ECD_00038at 38.648 kb on - strand, within ECD_00038at 38.755 kb on + strandat 38.755 kb on + strandat 38.756 kb on - strandat 38.756 kb on - strandat 38.922 kb on + strandat 38.958 kb on - strandat 39.135 kb on - strand, within ECD_00039at 39.145 kb on - strand, within ECD_00039at 39.257 kb on + strand, within ECD_00039at 39.258 kb on - strand, within ECD_00039at 39.378 kb on - strand, within ECD_00039at 39.460 kb on + strand, within ECD_00039at 39.460 kb on + strand, within ECD_00039at 39.461 kb on - strand, within ECD_00039at 39.556 kb on + strandat 39.559 kb on + strandat 39.559 kb on + strandat 39.560 kb on - strandat 39.560 kb on - strandat 39.658 kb on - strandat 39.682 kb on + strand, within ECD_00040at 39.684 kb on + strand, within ECD_00040at 39.726 kb on + strand, within ECD_00040at 39.727 kb on - strand, within ECD_00040at 39.727 kb on - strand, within ECD_00040at 39.767 kb on - strand, within ECD_00040at 40.067 kb on - strand, within ECD_00040at 40.217 kb on + strand, within ECD_00040at 40.248 kb on - strand, within ECD_00040at 40.468 kb on - strandat 41.133 kb on + strand, within ECD_00041at 41.197 kb on + strand, within ECD_00041at 41.198 kb on - strand, within ECD_00041at 41.198 kb on - strand, within ECD_00041at 41.246 kb on + strand, within ECD_00041at 41.246 kb on + strand, within ECD_00041at 41.247 kb on - strand, within ECD_00041at 41.370 kb on + strand, within ECD_00041at 41.370 kb on + strand, within ECD_00041at 41.410 kb on - strand, within ECD_00041at 41.412 kb on + strand, within ECD_00041

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas30
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38,647 + ECD_00038 0.69 +0.0
38,648 - ECD_00038 0.70 -0.2
38,755 + +1.6
38,755 + +0.3
38,756 - -0.3
38,756 - +0.0
38,922 + +0.3
38,958 - +0.5
39,135 - ECD_00039 0.27 -0.0
39,145 - ECD_00039 0.29 -0.1
39,257 + ECD_00039 0.48 -0.1
39,258 - ECD_00039 0.48 +0.5
39,378 - ECD_00039 0.68 +1.0
39,460 + ECD_00039 0.82 -0.5
39,460 + ECD_00039 0.82 +0.1
39,461 - ECD_00039 0.82 +0.6
39,556 + -0.6
39,559 + -2.3
39,559 + -0.2
39,560 - +0.6
39,560 - -0.7
39,658 - -0.2
39,682 + ECD_00040 0.12 -0.6
39,684 + ECD_00040 0.13 -0.2
39,726 + ECD_00040 0.17 -0.1
39,727 - ECD_00040 0.17 -1.1
39,727 - ECD_00040 0.17 -0.0
39,767 - ECD_00040 0.22 -0.7
40,067 - ECD_00040 0.55 -0.4
40,217 + ECD_00040 0.72 +0.5
40,248 - ECD_00040 0.76 +0.3
40,468 - -0.8
41,133 + ECD_00041 0.43 -0.1
41,197 + ECD_00041 0.47 +1.3
41,198 - ECD_00041 0.47 +0.7
41,198 - ECD_00041 0.47 +0.7
41,246 + ECD_00041 0.50 +0.4
41,246 + ECD_00041 0.50 +0.5
41,247 - ECD_00041 0.50 +0.1
41,370 + ECD_00041 0.58 +0.8
41,370 + ECD_00041 0.58 -0.2
41,410 - ECD_00041 0.61 +1.3
41,412 + ECD_00041 0.61 -0.0

Or see this region's nucleotide sequence