Strain Fitness in Escherichia coli BL21 around ECD_03601

Experiment: Bas50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03599 and ECD_03600 are separated by 66 nucleotidesECD_03600 and ECD_03601 are separated by 48 nucleotidesECD_03601 and ECD_03602 are separated by 61 nucleotidesECD_03602 and ECD_03603 are separated by 14 nucleotides ECD_03599: ECD_03599 - phosphoenolpyruvate and 6-phosphogluconate phosphatase, at 3,785,572 to 3,786,237 _03599 ECD_03600: ECD_03600 - PRK09823 family inner membrane protein, creBC regulon, at 3,786,304 to 3,786,777 _03600 ECD_03601: ECD_03601 - UPF0167 family protein, at 3,786,826 to 3,787,413 _03601 ECD_03602: ECD_03602 - putative 6-phosphogluconolactonase, at 3,787,475 to 3,788,197 _03602 ECD_03603: ECD_03603 - putative xylanase, at 3,788,212 to 3,789,381 _03603 Position (kb) 3786 3787 3788Strain fitness (log2 ratio) -2 -1 0 1 2at 3785.891 kb on + strand, within ECD_03599at 3785.892 kb on - strand, within ECD_03599at 3785.892 kb on - strand, within ECD_03599at 3785.895 kb on + strand, within ECD_03599at 3785.895 kb on + strand, within ECD_03599at 3785.895 kb on + strand, within ECD_03599at 3785.926 kb on - strand, within ECD_03599at 3785.926 kb on - strand, within ECD_03599at 3785.940 kb on + strand, within ECD_03599at 3785.941 kb on - strand, within ECD_03599at 3785.941 kb on - strand, within ECD_03599at 3785.951 kb on - strand, within ECD_03599at 3785.951 kb on - strand, within ECD_03599at 3786.042 kb on - strand, within ECD_03599at 3786.108 kb on + strand, within ECD_03599at 3786.121 kb on + strand, within ECD_03599at 3786.121 kb on + strand, within ECD_03599at 3786.122 kb on - strand, within ECD_03599at 3786.178 kb on - strandat 3786.178 kb on - strandat 3786.228 kb on + strandat 3786.235 kb on + strandat 3786.236 kb on - strandat 3786.236 kb on - strandat 3786.236 kb on - strandat 3786.285 kb on + strandat 3786.286 kb on - strandat 3786.291 kb on - strandat 3786.291 kb on - strandat 3786.304 kb on - strandat 3786.304 kb on - strandat 3786.353 kb on + strand, within ECD_03600at 3786.388 kb on + strand, within ECD_03600at 3786.389 kb on - strand, within ECD_03600at 3786.389 kb on - strand, within ECD_03600at 3786.428 kb on + strand, within ECD_03600at 3786.428 kb on + strand, within ECD_03600at 3786.432 kb on - strand, within ECD_03600at 3786.437 kb on + strand, within ECD_03600at 3786.438 kb on - strand, within ECD_03600at 3786.438 kb on - strand, within ECD_03600at 3786.455 kb on + strand, within ECD_03600at 3786.477 kb on + strand, within ECD_03600at 3786.478 kb on - strand, within ECD_03600at 3786.544 kb on + strand, within ECD_03600at 3786.566 kb on + strand, within ECD_03600at 3786.566 kb on + strand, within ECD_03600at 3786.566 kb on + strand, within ECD_03600at 3786.592 kb on + strand, within ECD_03600at 3786.604 kb on - strand, within ECD_03600at 3786.604 kb on - strand, within ECD_03600at 3786.612 kb on + strand, within ECD_03600at 3786.612 kb on + strand, within ECD_03600at 3786.612 kb on + strand, within ECD_03600at 3786.613 kb on - strand, within ECD_03600at 3786.771 kb on - strandat 3786.771 kb on - strandat 3786.789 kb on + strandat 3786.823 kb on - strandat 3786.825 kb on + strandat 3786.825 kb on + strandat 3786.903 kb on + strand, within ECD_03601at 3786.946 kb on + strand, within ECD_03601at 3786.965 kb on - strand, within ECD_03601at 3787.061 kb on + strand, within ECD_03601at 3787.061 kb on + strand, within ECD_03601at 3787.062 kb on - strand, within ECD_03601at 3787.110 kb on + strand, within ECD_03601at 3787.111 kb on - strand, within ECD_03601at 3787.120 kb on + strand, within ECD_03601at 3787.120 kb on + strand, within ECD_03601at 3787.121 kb on - strand, within ECD_03601at 3787.121 kb on - strand, within ECD_03601at 3787.121 kb on - strand, within ECD_03601at 3787.228 kb on + strand, within ECD_03601at 3787.245 kb on + strand, within ECD_03601at 3787.245 kb on + strand, within ECD_03601at 3787.246 kb on - strand, within ECD_03601at 3787.247 kb on + strand, within ECD_03601at 3787.248 kb on - strand, within ECD_03601at 3787.248 kb on - strand, within ECD_03601at 3787.305 kb on + strand, within ECD_03601at 3787.320 kb on - strand, within ECD_03601at 3787.323 kb on + strand, within ECD_03601at 3787.416 kb on - strandat 3787.416 kb on - strandat 3787.416 kb on - strandat 3787.423 kb on + strandat 3787.451 kb on + strandat 3787.452 kb on - strandat 3787.607 kb on - strand, within ECD_03602at 3787.626 kb on - strand, within ECD_03602at 3787.626 kb on - strand, within ECD_03602at 3787.674 kb on + strand, within ECD_03602at 3787.674 kb on + strand, within ECD_03602at 3787.675 kb on - strand, within ECD_03602at 3787.726 kb on + strand, within ECD_03602at 3787.784 kb on - strand, within ECD_03602at 3787.881 kb on + strand, within ECD_03602at 3787.882 kb on - strand, within ECD_03602at 3787.886 kb on - strand, within ECD_03602at 3787.886 kb on - strand, within ECD_03602at 3787.891 kb on + strand, within ECD_03602at 3787.891 kb on + strand, within ECD_03602at 3787.906 kb on + strand, within ECD_03602at 3787.958 kb on - strand, within ECD_03602at 3788.011 kb on - strand, within ECD_03602at 3788.011 kb on - strand, within ECD_03602at 3788.016 kb on + strand, within ECD_03602at 3788.016 kb on + strand, within ECD_03602at 3788.016 kb on + strand, within ECD_03602at 3788.017 kb on - strand, within ECD_03602at 3788.029 kb on - strand, within ECD_03602at 3788.039 kb on - strand, within ECD_03602at 3788.062 kb on - strand, within ECD_03602at 3788.062 kb on - strand, within ECD_03602at 3788.067 kb on + strand, within ECD_03602at 3788.067 kb on + strand, within ECD_03602at 3788.067 kb on + strand, within ECD_03602at 3788.067 kb on + strand, within ECD_03602at 3788.067 kb on + strand, within ECD_03602at 3788.067 kb on + strand, within ECD_03602at 3788.067 kb on + strand, within ECD_03602at 3788.068 kb on - strand, within ECD_03602at 3788.068 kb on - strand, within ECD_03602at 3788.068 kb on - strand, within ECD_03602at 3788.068 kb on - strand, within ECD_03602at 3788.068 kb on - strand, within ECD_03602at 3788.068 kb on - strand, within ECD_03602at 3788.128 kb on + strandat 3788.128 kb on + strandat 3788.128 kb on + strandat 3788.129 kb on - strandat 3788.129 kb on - strandat 3788.130 kb on + strandat 3788.130 kb on + strandat 3788.130 kb on + strandat 3788.131 kb on - strandat 3788.131 kb on - strandat 3788.131 kb on - strandat 3788.131 kb on - strandat 3788.356 kb on + strand, within ECD_03603at 3788.367 kb on + strand, within ECD_03603at 3788.385 kb on + strand, within ECD_03603at 3788.395 kb on + strand, within ECD_03603at 3788.395 kb on + strand, within ECD_03603at 3788.396 kb on - strand, within ECD_03603at 3788.409 kb on + strand, within ECD_03603at 3788.409 kb on + strand, within ECD_03603at 3788.409 kb on + strand, within ECD_03603at 3788.409 kb on + strand, within ECD_03603at 3788.410 kb on - strand, within ECD_03603at 3788.410 kb on - strand, within ECD_03603at 3788.410 kb on - strand, within ECD_03603at 3788.410 kb on - strand, within ECD_03603at 3788.410 kb on - strand, within ECD_03603at 3788.410 kb on - strand, within ECD_03603

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
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3,785,891 + ECD_03599 0.48 +0.3
3,785,892 - ECD_03599 0.48 +0.3
3,785,892 - ECD_03599 0.48 -0.5
3,785,895 + ECD_03599 0.48 -0.5
3,785,895 + ECD_03599 0.48 +0.4
3,785,895 + ECD_03599 0.48 -0.0
3,785,926 - ECD_03599 0.53 +0.3
3,785,926 - ECD_03599 0.53 +0.1
3,785,940 + ECD_03599 0.55 +0.5
3,785,941 - ECD_03599 0.55 +0.2
3,785,941 - ECD_03599 0.55 -0.7
3,785,951 - ECD_03599 0.57 +1.8
3,785,951 - ECD_03599 0.57 +0.8
3,786,042 - ECD_03599 0.71 -0.8
3,786,108 + ECD_03599 0.80 -1.1
3,786,121 + ECD_03599 0.82 +0.3
3,786,121 + ECD_03599 0.82 +0.9
3,786,122 - ECD_03599 0.83 -0.7
3,786,178 - -0.2
3,786,178 - +0.8
3,786,228 + +1.1
3,786,235 + -0.1
3,786,236 - -0.1
3,786,236 - -0.7
3,786,236 - -0.4
3,786,285 + +0.1
3,786,286 - +0.5
3,786,291 - +0.2
3,786,291 - -0.1
3,786,304 - +0.7
3,786,304 - -0.8
3,786,353 + ECD_03600 0.10 +0.4
3,786,388 + ECD_03600 0.18 +0.3
3,786,389 - ECD_03600 0.18 +0.1
3,786,389 - ECD_03600 0.18 +0.4
3,786,428 + ECD_03600 0.26 +0.1
3,786,428 + ECD_03600 0.26 -0.9
3,786,432 - ECD_03600 0.27 -0.1
3,786,437 + ECD_03600 0.28 -0.3
3,786,438 - ECD_03600 0.28 +0.6
3,786,438 - ECD_03600 0.28 -1.8
3,786,455 + ECD_03600 0.32 +0.5
3,786,477 + ECD_03600 0.36 +0.3
3,786,478 - ECD_03600 0.37 +0.2
3,786,544 + ECD_03600 0.51 +0.2
3,786,566 + ECD_03600 0.55 -0.7
3,786,566 + ECD_03600 0.55 -1.4
3,786,566 + ECD_03600 0.55 -2.5
3,786,592 + ECD_03600 0.61 +0.6
3,786,604 - ECD_03600 0.63 +0.3
3,786,604 - ECD_03600 0.63 -0.0
3,786,612 + ECD_03600 0.65 -0.7
3,786,612 + ECD_03600 0.65 +0.0
3,786,612 + ECD_03600 0.65 -0.2
3,786,613 - ECD_03600 0.65 -0.1
3,786,771 - +0.7
3,786,771 - +0.0
3,786,789 + +1.0
3,786,823 - +0.8
3,786,825 + -0.4
3,786,825 + +0.4
3,786,903 + ECD_03601 0.13 +0.4
3,786,946 + ECD_03601 0.20 -1.6
3,786,965 - ECD_03601 0.24 -0.2
3,787,061 + ECD_03601 0.40 +0.1
3,787,061 + ECD_03601 0.40 +0.3
3,787,062 - ECD_03601 0.40 +0.3
3,787,110 + ECD_03601 0.48 +0.2
3,787,111 - ECD_03601 0.48 -0.6
3,787,120 + ECD_03601 0.50 -0.4
3,787,120 + ECD_03601 0.50 -1.1
3,787,121 - ECD_03601 0.50 +0.5
3,787,121 - ECD_03601 0.50 -0.5
3,787,121 - ECD_03601 0.50 -0.2
3,787,228 + ECD_03601 0.68 -0.7
3,787,245 + ECD_03601 0.71 +1.0
3,787,245 + ECD_03601 0.71 -0.3
3,787,246 - ECD_03601 0.71 +1.0
3,787,247 + ECD_03601 0.72 +1.1
3,787,248 - ECD_03601 0.72 -0.2
3,787,248 - ECD_03601 0.72 -0.8
3,787,305 + ECD_03601 0.81 -0.2
3,787,320 - ECD_03601 0.84 -1.2
3,787,323 + ECD_03601 0.85 -2.1
3,787,416 - -0.0
3,787,416 - +0.3
3,787,416 - +0.5
3,787,423 + -0.2
3,787,451 + -0.7
3,787,452 - -0.0
3,787,607 - ECD_03602 0.18 +0.6
3,787,626 - ECD_03602 0.21 +0.4
3,787,626 - ECD_03602 0.21 -0.2
3,787,674 + ECD_03602 0.28 +0.9
3,787,674 + ECD_03602 0.28 -1.3
3,787,675 - ECD_03602 0.28 +0.1
3,787,726 + ECD_03602 0.35 +0.1
3,787,784 - ECD_03602 0.43 -0.2
3,787,881 + ECD_03602 0.56 -0.1
3,787,882 - ECD_03602 0.56 +0.6
3,787,886 - ECD_03602 0.57 +0.8
3,787,886 - ECD_03602 0.57 -0.0
3,787,891 + ECD_03602 0.58 -0.7
3,787,891 + ECD_03602 0.58 +0.7
3,787,906 + ECD_03602 0.60 -0.3
3,787,958 - ECD_03602 0.67 -0.1
3,788,011 - ECD_03602 0.74 +1.2
3,788,011 - ECD_03602 0.74 +0.5
3,788,016 + ECD_03602 0.75 +0.7
3,788,016 + ECD_03602 0.75 -0.4
3,788,016 + ECD_03602 0.75 -1.0
3,788,017 - ECD_03602 0.75 -0.0
3,788,029 - ECD_03602 0.77 -0.0
3,788,039 - ECD_03602 0.78 +0.1
3,788,062 - ECD_03602 0.81 -0.2
3,788,062 - ECD_03602 0.81 +0.6
3,788,067 + ECD_03602 0.82 +0.3
3,788,067 + ECD_03602 0.82 +0.1
3,788,067 + ECD_03602 0.82 +0.3
3,788,067 + ECD_03602 0.82 -0.6
3,788,067 + ECD_03602 0.82 +0.2
3,788,067 + ECD_03602 0.82 -0.1
3,788,067 + ECD_03602 0.82 -1.4
3,788,068 - ECD_03602 0.82 +0.7
3,788,068 - ECD_03602 0.82 +0.0
3,788,068 - ECD_03602 0.82 +0.2
3,788,068 - ECD_03602 0.82 -1.4
3,788,068 - ECD_03602 0.82 +1.0
3,788,068 - ECD_03602 0.82 +0.1
3,788,128 + +0.1
3,788,128 + +0.5
3,788,128 + -0.3
3,788,129 - +0.8
3,788,129 - -1.0
3,788,130 + -2.6
3,788,130 + -0.7
3,788,130 + -0.0
3,788,131 - -0.4
3,788,131 - -0.3
3,788,131 - +0.4
3,788,131 - +0.7
3,788,356 + ECD_03603 0.12 +0.4
3,788,367 + ECD_03603 0.13 +0.0
3,788,385 + ECD_03603 0.15 -0.6
3,788,395 + ECD_03603 0.16 +0.2
3,788,395 + ECD_03603 0.16 -1.0
3,788,396 - ECD_03603 0.16 +0.9
3,788,409 + ECD_03603 0.17 -0.4
3,788,409 + ECD_03603 0.17 -0.2
3,788,409 + ECD_03603 0.17 -0.3
3,788,409 + ECD_03603 0.17 +0.2
3,788,410 - ECD_03603 0.17 -0.1
3,788,410 - ECD_03603 0.17 +0.3
3,788,410 - ECD_03603 0.17 +1.3
3,788,410 - ECD_03603 0.17 -1.0
3,788,410 - ECD_03603 0.17 +0.2
3,788,410 - ECD_03603 0.17 +0.0

Or see this region's nucleotide sequence