Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03599 and ECD_03600 are separated by 66 nucleotides ECD_03600 and ECD_03601 are separated by 48 nucleotides ECD_03601 and ECD_03602 are separated by 61 nucleotides ECD_03602 and ECD_03603 are separated by 14 nucleotides
ECD_03599: ECD_03599 - phosphoenolpyruvate and 6-phosphogluconate phosphatase, at 3,785,572 to 3,786,237
_03599
ECD_03600: ECD_03600 - PRK09823 family inner membrane protein, creBC regulon, at 3,786,304 to 3,786,777
_03600
ECD_03601: ECD_03601 - UPF0167 family protein, at 3,786,826 to 3,787,413
_03601
ECD_03602: ECD_03602 - putative 6-phosphogluconolactonase, at 3,787,475 to 3,788,197
_03602
ECD_03603: ECD_03603 - putative xylanase, at 3,788,212 to 3,789,381
_03603
Position (kb)
3786
3787
3788 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3785.891 kb on + strand, within ECD_03599 at 3785.892 kb on - strand, within ECD_03599 at 3785.892 kb on - strand, within ECD_03599 at 3785.895 kb on + strand, within ECD_03599 at 3785.895 kb on + strand, within ECD_03599 at 3785.895 kb on + strand, within ECD_03599 at 3785.926 kb on - strand, within ECD_03599 at 3785.926 kb on - strand, within ECD_03599 at 3785.940 kb on + strand, within ECD_03599 at 3785.941 kb on - strand, within ECD_03599 at 3785.941 kb on - strand, within ECD_03599 at 3785.951 kb on - strand, within ECD_03599 at 3785.951 kb on - strand, within ECD_03599 at 3786.042 kb on - strand, within ECD_03599 at 3786.108 kb on + strand, within ECD_03599 at 3786.121 kb on + strand, within ECD_03599 at 3786.121 kb on + strand, within ECD_03599 at 3786.122 kb on - strand, within ECD_03599 at 3786.178 kb on - strand at 3786.178 kb on - strand at 3786.228 kb on + strand at 3786.235 kb on + strand at 3786.236 kb on - strand at 3786.236 kb on - strand at 3786.236 kb on - strand at 3786.285 kb on + strand at 3786.286 kb on - strand at 3786.291 kb on - strand at 3786.291 kb on - strand at 3786.304 kb on - strand at 3786.304 kb on - strand at 3786.353 kb on + strand, within ECD_03600 at 3786.388 kb on + strand, within ECD_03600 at 3786.389 kb on - strand, within ECD_03600 at 3786.389 kb on - strand, within ECD_03600 at 3786.428 kb on + strand, within ECD_03600 at 3786.428 kb on + strand, within ECD_03600 at 3786.432 kb on - strand, within ECD_03600 at 3786.437 kb on + strand, within ECD_03600 at 3786.438 kb on - strand, within ECD_03600 at 3786.438 kb on - strand, within ECD_03600 at 3786.455 kb on + strand, within ECD_03600 at 3786.477 kb on + strand, within ECD_03600 at 3786.478 kb on - strand, within ECD_03600 at 3786.544 kb on + strand, within ECD_03600 at 3786.566 kb on + strand, within ECD_03600 at 3786.566 kb on + strand, within ECD_03600 at 3786.566 kb on + strand, within ECD_03600 at 3786.592 kb on + strand, within ECD_03600 at 3786.604 kb on - strand, within ECD_03600 at 3786.604 kb on - strand, within ECD_03600 at 3786.612 kb on + strand, within ECD_03600 at 3786.612 kb on + strand, within ECD_03600 at 3786.612 kb on + strand, within ECD_03600 at 3786.613 kb on - strand, within ECD_03600 at 3786.771 kb on - strand at 3786.771 kb on - strand at 3786.789 kb on + strand at 3786.823 kb on - strand at 3786.825 kb on + strand at 3786.825 kb on + strand at 3786.903 kb on + strand, within ECD_03601 at 3786.946 kb on + strand, within ECD_03601 at 3786.965 kb on - strand, within ECD_03601 at 3787.061 kb on + strand, within ECD_03601 at 3787.061 kb on + strand, within ECD_03601 at 3787.062 kb on - strand, within ECD_03601 at 3787.110 kb on + strand, within ECD_03601 at 3787.111 kb on - strand, within ECD_03601 at 3787.120 kb on + strand, within ECD_03601 at 3787.120 kb on + strand, within ECD_03601 at 3787.121 kb on - strand, within ECD_03601 at 3787.121 kb on - strand, within ECD_03601 at 3787.121 kb on - strand, within ECD_03601 at 3787.228 kb on + strand, within ECD_03601 at 3787.245 kb on + strand, within ECD_03601 at 3787.245 kb on + strand, within ECD_03601 at 3787.246 kb on - strand, within ECD_03601 at 3787.247 kb on + strand, within ECD_03601 at 3787.248 kb on - strand, within ECD_03601 at 3787.248 kb on - strand, within ECD_03601 at 3787.305 kb on + strand, within ECD_03601 at 3787.320 kb on - strand, within ECD_03601 at 3787.323 kb on + strand, within ECD_03601 at 3787.416 kb on - strand at 3787.416 kb on - strand at 3787.416 kb on - strand at 3787.423 kb on + strand at 3787.451 kb on + strand at 3787.452 kb on - strand at 3787.607 kb on - strand, within ECD_03602 at 3787.626 kb on - strand, within ECD_03602 at 3787.626 kb on - strand, within ECD_03602 at 3787.674 kb on + strand, within ECD_03602 at 3787.674 kb on + strand, within ECD_03602 at 3787.675 kb on - strand, within ECD_03602 at 3787.726 kb on + strand, within ECD_03602 at 3787.784 kb on - strand, within ECD_03602 at 3787.881 kb on + strand, within ECD_03602 at 3787.882 kb on - strand, within ECD_03602 at 3787.886 kb on - strand, within ECD_03602 at 3787.886 kb on - strand, within ECD_03602 at 3787.891 kb on + strand, within ECD_03602 at 3787.891 kb on + strand, within ECD_03602 at 3787.906 kb on + strand, within ECD_03602 at 3787.958 kb on - strand, within ECD_03602 at 3788.011 kb on - strand, within ECD_03602 at 3788.011 kb on - strand, within ECD_03602 at 3788.016 kb on + strand, within ECD_03602 at 3788.016 kb on + strand, within ECD_03602 at 3788.016 kb on + strand, within ECD_03602 at 3788.017 kb on - strand, within ECD_03602 at 3788.029 kb on - strand, within ECD_03602 at 3788.039 kb on - strand, within ECD_03602 at 3788.062 kb on - strand, within ECD_03602 at 3788.062 kb on - strand, within ECD_03602 at 3788.067 kb on + strand, within ECD_03602 at 3788.067 kb on + strand, within ECD_03602 at 3788.067 kb on + strand, within ECD_03602 at 3788.067 kb on + strand, within ECD_03602 at 3788.067 kb on + strand, within ECD_03602 at 3788.067 kb on + strand, within ECD_03602 at 3788.067 kb on + strand, within ECD_03602 at 3788.068 kb on - strand, within ECD_03602 at 3788.068 kb on - strand, within ECD_03602 at 3788.068 kb on - strand, within ECD_03602 at 3788.068 kb on - strand, within ECD_03602 at 3788.068 kb on - strand, within ECD_03602 at 3788.068 kb on - strand, within ECD_03602 at 3788.128 kb on + strand at 3788.128 kb on + strand at 3788.128 kb on + strand at 3788.129 kb on - strand at 3788.129 kb on - strand at 3788.130 kb on + strand at 3788.130 kb on + strand at 3788.130 kb on + strand at 3788.131 kb on - strand at 3788.131 kb on - strand at 3788.131 kb on - strand at 3788.131 kb on - strand at 3788.356 kb on + strand, within ECD_03603 at 3788.367 kb on + strand, within ECD_03603 at 3788.385 kb on + strand, within ECD_03603 at 3788.395 kb on + strand, within ECD_03603 at 3788.395 kb on + strand, within ECD_03603 at 3788.396 kb on - strand, within ECD_03603 at 3788.409 kb on + strand, within ECD_03603 at 3788.409 kb on + strand, within ECD_03603 at 3788.409 kb on + strand, within ECD_03603 at 3788.409 kb on + strand, within ECD_03603 at 3788.410 kb on - strand, within ECD_03603 at 3788.410 kb on - strand, within ECD_03603 at 3788.410 kb on - strand, within ECD_03603 at 3788.410 kb on - strand, within ECD_03603 at 3788.410 kb on - strand, within ECD_03603 at 3788.410 kb on - strand, within ECD_03603
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 3,785,891 + ECD_03599 0.48 +0.3 3,785,892 - ECD_03599 0.48 +0.3 3,785,892 - ECD_03599 0.48 -0.5 3,785,895 + ECD_03599 0.48 -0.5 3,785,895 + ECD_03599 0.48 +0.4 3,785,895 + ECD_03599 0.48 -0.0 3,785,926 - ECD_03599 0.53 +0.3 3,785,926 - ECD_03599 0.53 +0.1 3,785,940 + ECD_03599 0.55 +0.5 3,785,941 - ECD_03599 0.55 +0.2 3,785,941 - ECD_03599 0.55 -0.7 3,785,951 - ECD_03599 0.57 +1.8 3,785,951 - ECD_03599 0.57 +0.8 3,786,042 - ECD_03599 0.71 -0.8 3,786,108 + ECD_03599 0.80 -1.1 3,786,121 + ECD_03599 0.82 +0.3 3,786,121 + ECD_03599 0.82 +0.9 3,786,122 - ECD_03599 0.83 -0.7 3,786,178 - -0.2 3,786,178 - +0.8 3,786,228 + +1.1 3,786,235 + -0.1 3,786,236 - -0.1 3,786,236 - -0.7 3,786,236 - -0.4 3,786,285 + +0.1 3,786,286 - +0.5 3,786,291 - +0.2 3,786,291 - -0.1 3,786,304 - +0.7 3,786,304 - -0.8 3,786,353 + ECD_03600 0.10 +0.4 3,786,388 + ECD_03600 0.18 +0.3 3,786,389 - ECD_03600 0.18 +0.1 3,786,389 - ECD_03600 0.18 +0.4 3,786,428 + ECD_03600 0.26 +0.1 3,786,428 + ECD_03600 0.26 -0.9 3,786,432 - ECD_03600 0.27 -0.1 3,786,437 + ECD_03600 0.28 -0.3 3,786,438 - ECD_03600 0.28 +0.6 3,786,438 - ECD_03600 0.28 -1.8 3,786,455 + ECD_03600 0.32 +0.5 3,786,477 + ECD_03600 0.36 +0.3 3,786,478 - ECD_03600 0.37 +0.2 3,786,544 + ECD_03600 0.51 +0.2 3,786,566 + ECD_03600 0.55 -0.7 3,786,566 + ECD_03600 0.55 -1.4 3,786,566 + ECD_03600 0.55 -2.5 3,786,592 + ECD_03600 0.61 +0.6 3,786,604 - ECD_03600 0.63 +0.3 3,786,604 - ECD_03600 0.63 -0.0 3,786,612 + ECD_03600 0.65 -0.7 3,786,612 + ECD_03600 0.65 +0.0 3,786,612 + ECD_03600 0.65 -0.2 3,786,613 - ECD_03600 0.65 -0.1 3,786,771 - +0.7 3,786,771 - +0.0 3,786,789 + +1.0 3,786,823 - +0.8 3,786,825 + -0.4 3,786,825 + +0.4 3,786,903 + ECD_03601 0.13 +0.4 3,786,946 + ECD_03601 0.20 -1.6 3,786,965 - ECD_03601 0.24 -0.2 3,787,061 + ECD_03601 0.40 +0.1 3,787,061 + ECD_03601 0.40 +0.3 3,787,062 - ECD_03601 0.40 +0.3 3,787,110 + ECD_03601 0.48 +0.2 3,787,111 - ECD_03601 0.48 -0.6 3,787,120 + ECD_03601 0.50 -0.4 3,787,120 + ECD_03601 0.50 -1.1 3,787,121 - ECD_03601 0.50 +0.5 3,787,121 - ECD_03601 0.50 -0.5 3,787,121 - ECD_03601 0.50 -0.2 3,787,228 + ECD_03601 0.68 -0.7 3,787,245 + ECD_03601 0.71 +1.0 3,787,245 + ECD_03601 0.71 -0.3 3,787,246 - ECD_03601 0.71 +1.0 3,787,247 + ECD_03601 0.72 +1.1 3,787,248 - ECD_03601 0.72 -0.2 3,787,248 - ECD_03601 0.72 -0.8 3,787,305 + ECD_03601 0.81 -0.2 3,787,320 - ECD_03601 0.84 -1.2 3,787,323 + ECD_03601 0.85 -2.1 3,787,416 - -0.0 3,787,416 - +0.3 3,787,416 - +0.5 3,787,423 + -0.2 3,787,451 + -0.7 3,787,452 - -0.0 3,787,607 - ECD_03602 0.18 +0.6 3,787,626 - ECD_03602 0.21 +0.4 3,787,626 - ECD_03602 0.21 -0.2 3,787,674 + ECD_03602 0.28 +0.9 3,787,674 + ECD_03602 0.28 -1.3 3,787,675 - ECD_03602 0.28 +0.1 3,787,726 + ECD_03602 0.35 +0.1 3,787,784 - ECD_03602 0.43 -0.2 3,787,881 + ECD_03602 0.56 -0.1 3,787,882 - ECD_03602 0.56 +0.6 3,787,886 - ECD_03602 0.57 +0.8 3,787,886 - ECD_03602 0.57 -0.0 3,787,891 + ECD_03602 0.58 -0.7 3,787,891 + ECD_03602 0.58 +0.7 3,787,906 + ECD_03602 0.60 -0.3 3,787,958 - ECD_03602 0.67 -0.1 3,788,011 - ECD_03602 0.74 +1.2 3,788,011 - ECD_03602 0.74 +0.5 3,788,016 + ECD_03602 0.75 +0.7 3,788,016 + ECD_03602 0.75 -0.4 3,788,016 + ECD_03602 0.75 -1.0 3,788,017 - ECD_03602 0.75 -0.0 3,788,029 - ECD_03602 0.77 -0.0 3,788,039 - ECD_03602 0.78 +0.1 3,788,062 - ECD_03602 0.81 -0.2 3,788,062 - ECD_03602 0.81 +0.6 3,788,067 + ECD_03602 0.82 +0.3 3,788,067 + ECD_03602 0.82 +0.1 3,788,067 + ECD_03602 0.82 +0.3 3,788,067 + ECD_03602 0.82 -0.6 3,788,067 + ECD_03602 0.82 +0.2 3,788,067 + ECD_03602 0.82 -0.1 3,788,067 + ECD_03602 0.82 -1.4 3,788,068 - ECD_03602 0.82 +0.7 3,788,068 - ECD_03602 0.82 +0.0 3,788,068 - ECD_03602 0.82 +0.2 3,788,068 - ECD_03602 0.82 -1.4 3,788,068 - ECD_03602 0.82 +1.0 3,788,068 - ECD_03602 0.82 +0.1 3,788,128 + +0.1 3,788,128 + +0.5 3,788,128 + -0.3 3,788,129 - +0.8 3,788,129 - -1.0 3,788,130 + -2.6 3,788,130 + -0.7 3,788,130 + -0.0 3,788,131 - -0.4 3,788,131 - -0.3 3,788,131 - +0.4 3,788,131 - +0.7 3,788,356 + ECD_03603 0.12 +0.4 3,788,367 + ECD_03603 0.13 +0.0 3,788,385 + ECD_03603 0.15 -0.6 3,788,395 + ECD_03603 0.16 +0.2 3,788,395 + ECD_03603 0.16 -1.0 3,788,396 - ECD_03603 0.16 +0.9 3,788,409 + ECD_03603 0.17 -0.4 3,788,409 + ECD_03603 0.17 -0.2 3,788,409 + ECD_03603 0.17 -0.3 3,788,409 + ECD_03603 0.17 +0.2 3,788,410 - ECD_03603 0.17 -0.1 3,788,410 - ECD_03603 0.17 +0.3 3,788,410 - ECD_03603 0.17 +1.3 3,788,410 - ECD_03603 0.17 -1.0 3,788,410 - ECD_03603 0.17 +0.2 3,788,410 - ECD_03603 0.17 +0.0
Or see this region's nucleotide sequence