Strain Fitness in Escherichia coli BL21 around ECD_03556

Experiment: Bas50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03555 and ECD_03556 are separated by 105 nucleotidesECD_03556 and ECD_04379 are separated by 273 nucleotidesECD_04379 and ECD_03557 are separated by 501 nucleotides ECD_03555: ECD_03555 - acetolactate synthase 2 large subunit, at 3,739,462 to 3,741,150 _03555 ECD_03556: ECD_03556 - ilvB operon leader peptide, at 3,741,256 to 3,741,354 _03556 ECD_04379: ECD_04379 - hypothetical protein, at 3,741,628 to 3,741,786 _04379 ECD_03557: ECD_03557 - multidrug efflux system protein, at 3,742,288 to 3,743,472 _03557 Position (kb) 3741 3742Strain fitness (log2 ratio) -2 -1 0 1 2at 3740.312 kb on - strand, within ECD_03555at 3740.337 kb on + strand, within ECD_03555at 3740.338 kb on - strand, within ECD_03555at 3740.340 kb on - strand, within ECD_03555at 3740.374 kb on - strand, within ECD_03555at 3740.502 kb on - strand, within ECD_03555at 3740.563 kb on - strand, within ECD_03555at 3740.637 kb on + strand, within ECD_03555at 3740.643 kb on + strand, within ECD_03555at 3740.644 kb on - strand, within ECD_03555at 3740.647 kb on + strand, within ECD_03555at 3740.647 kb on + strand, within ECD_03555at 3740.647 kb on + strand, within ECD_03555at 3740.647 kb on + strand, within ECD_03555at 3740.648 kb on - strand, within ECD_03555at 3740.721 kb on + strand, within ECD_03555at 3740.735 kb on + strand, within ECD_03555at 3740.735 kb on + strand, within ECD_03555at 3740.736 kb on - strand, within ECD_03555at 3740.758 kb on - strand, within ECD_03555at 3740.769 kb on - strand, within ECD_03555at 3740.901 kb on + strand, within ECD_03555at 3740.988 kb on + strandat 3741.014 kb on - strandat 3741.037 kb on - strandat 3741.037 kb on - strandat 3741.037 kb on - strandat 3741.037 kb on - strandat 3741.066 kb on + strandat 3741.066 kb on + strandat 3741.067 kb on - strandat 3741.067 kb on - strandat 3741.097 kb on - strandat 3741.326 kb on - strand, within ECD_03556at 3741.349 kb on - strandat 3741.349 kb on - strandat 3741.349 kb on - strandat 3741.349 kb on - strandat 3741.385 kb on + strandat 3741.386 kb on - strandat 3741.390 kb on - strandat 3741.390 kb on - strandat 3741.546 kb on + strandat 3741.547 kb on + strandat 3741.548 kb on - strandat 3741.548 kb on - strandat 3741.550 kb on + strandat 3741.550 kb on + strandat 3741.550 kb on + strandat 3741.550 kb on + strandat 3741.551 kb on - strandat 3741.551 kb on - strandat 3741.551 kb on - strandat 3741.567 kb on + strandat 3741.567 kb on + strandat 3741.570 kb on - strandat 3741.614 kb on + strandat 3741.614 kb on + strandat 3741.619 kb on - strandat 3741.625 kb on + strandat 3741.626 kb on - strandat 3741.691 kb on + strand, within ECD_04379at 3741.693 kb on + strand, within ECD_04379at 3741.693 kb on + strand, within ECD_04379at 3741.705 kb on - strand, within ECD_04379at 3741.705 kb on - strand, within ECD_04379at 3741.747 kb on + strand, within ECD_04379at 3741.784 kb on + strandat 3741.808 kb on + strandat 3741.808 kb on + strandat 3741.808 kb on + strandat 3741.808 kb on + strandat 3741.808 kb on + strandat 3741.809 kb on - strandat 3741.809 kb on - strandat 3741.879 kb on + strandat 3741.879 kb on + strandat 3741.879 kb on + strandat 3741.880 kb on - strandat 3741.919 kb on - strandat 3741.919 kb on - strandat 3741.919 kb on - strandat 3742.062 kb on + strandat 3742.062 kb on + strandat 3742.111 kb on + strandat 3742.153 kb on + strandat 3742.187 kb on + strandat 3742.187 kb on + strandat 3742.188 kb on - strandat 3742.188 kb on - strandat 3742.235 kb on - strandat 3742.247 kb on - strandat 3742.260 kb on - strandat 3742.316 kb on + strandat 3742.328 kb on + strandat 3742.331 kb on + strandat 3742.331 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
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3,740,312 - ECD_03555 0.50 -0.5
3,740,337 + ECD_03555 0.52 -0.4
3,740,338 - ECD_03555 0.52 +0.1
3,740,340 - ECD_03555 0.52 -0.2
3,740,374 - ECD_03555 0.54 +0.0
3,740,502 - ECD_03555 0.62 +0.5
3,740,563 - ECD_03555 0.65 +0.7
3,740,637 + ECD_03555 0.70 -0.1
3,740,643 + ECD_03555 0.70 +0.5
3,740,644 - ECD_03555 0.70 +0.7
3,740,647 + ECD_03555 0.70 -1.4
3,740,647 + ECD_03555 0.70 -0.9
3,740,647 + ECD_03555 0.70 -0.1
3,740,647 + ECD_03555 0.70 -0.2
3,740,648 - ECD_03555 0.70 -0.4
3,740,721 + ECD_03555 0.75 +0.4
3,740,735 + ECD_03555 0.75 +0.1
3,740,735 + ECD_03555 0.75 +2.0
3,740,736 - ECD_03555 0.75 -0.0
3,740,758 - ECD_03555 0.77 +0.1
3,740,769 - ECD_03555 0.77 +0.5
3,740,901 + ECD_03555 0.85 -0.1
3,740,988 + -0.7
3,741,014 - +1.2
3,741,037 - +0.3
3,741,037 - -0.3
3,741,037 - +2.1
3,741,037 - +0.3
3,741,066 + -0.5
3,741,066 + +0.9
3,741,067 - +0.4
3,741,067 - -1.4
3,741,097 - -2.4
3,741,326 - ECD_03556 0.71 -1.3
3,741,349 - -2.1
3,741,349 - -0.4
3,741,349 - -0.4
3,741,349 - +0.8
3,741,385 + +0.2
3,741,386 - +0.1
3,741,390 - +0.4
3,741,390 - +0.9
3,741,546 + -0.0
3,741,547 + -1.6
3,741,548 - +1.0
3,741,548 - +0.9
3,741,550 + -0.5
3,741,550 + +0.7
3,741,550 + -0.5
3,741,550 + -0.8
3,741,551 - +0.0
3,741,551 - -0.0
3,741,551 - -0.2
3,741,567 + -0.6
3,741,567 + +0.0
3,741,570 - -1.1
3,741,614 + +0.4
3,741,614 + -0.0
3,741,619 - -0.5
3,741,625 + -0.0
3,741,626 - +0.6
3,741,691 + ECD_04379 0.40 +0.4
3,741,693 + ECD_04379 0.41 +0.1
3,741,693 + ECD_04379 0.41 -0.6
3,741,705 - ECD_04379 0.48 +0.4
3,741,705 - ECD_04379 0.48 +0.3
3,741,747 + ECD_04379 0.75 +0.6
3,741,784 + -0.1
3,741,808 + +0.8
3,741,808 + -0.5
3,741,808 + +0.6
3,741,808 + -0.6
3,741,808 + +1.5
3,741,809 - +0.5
3,741,809 - +1.6
3,741,879 + +0.2
3,741,879 + +0.8
3,741,879 + +0.1
3,741,880 - +0.6
3,741,919 - -0.2
3,741,919 - +0.2
3,741,919 - +1.8
3,742,062 + -0.8
3,742,062 + +0.2
3,742,111 + +0.6
3,742,153 + +1.3
3,742,187 + +0.1
3,742,187 + -1.5
3,742,188 - +0.9
3,742,188 - -0.6
3,742,235 - +0.3
3,742,247 - +0.2
3,742,260 - -0.2
3,742,316 + -0.4
3,742,328 + +0.1
3,742,331 + +1.5
3,742,331 + -0.8

Or see this region's nucleotide sequence