Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03555 and ECD_03556 are separated by 105 nucleotides ECD_03556 and ECD_04379 are separated by 273 nucleotides ECD_04379 and ECD_03557 are separated by 501 nucleotides
ECD_03555: ECD_03555 - acetolactate synthase 2 large subunit, at 3,739,462 to 3,741,150
_03555
ECD_03556: ECD_03556 - ilvB operon leader peptide, at 3,741,256 to 3,741,354
_03556
ECD_04379: ECD_04379 - hypothetical protein, at 3,741,628 to 3,741,786
_04379
ECD_03557: ECD_03557 - multidrug efflux system protein, at 3,742,288 to 3,743,472
_03557
Position (kb)
3741
3742 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3740.312 kb on - strand, within ECD_03555 at 3740.337 kb on + strand, within ECD_03555 at 3740.338 kb on - strand, within ECD_03555 at 3740.340 kb on - strand, within ECD_03555 at 3740.374 kb on - strand, within ECD_03555 at 3740.502 kb on - strand, within ECD_03555 at 3740.563 kb on - strand, within ECD_03555 at 3740.637 kb on + strand, within ECD_03555 at 3740.643 kb on + strand, within ECD_03555 at 3740.644 kb on - strand, within ECD_03555 at 3740.647 kb on + strand, within ECD_03555 at 3740.647 kb on + strand, within ECD_03555 at 3740.647 kb on + strand, within ECD_03555 at 3740.647 kb on + strand, within ECD_03555 at 3740.648 kb on - strand, within ECD_03555 at 3740.721 kb on + strand, within ECD_03555 at 3740.735 kb on + strand, within ECD_03555 at 3740.735 kb on + strand, within ECD_03555 at 3740.736 kb on - strand, within ECD_03555 at 3740.758 kb on - strand, within ECD_03555 at 3740.769 kb on - strand, within ECD_03555 at 3740.901 kb on + strand, within ECD_03555 at 3740.988 kb on + strand at 3741.014 kb on - strand at 3741.037 kb on - strand at 3741.037 kb on - strand at 3741.037 kb on - strand at 3741.037 kb on - strand at 3741.066 kb on + strand at 3741.066 kb on + strand at 3741.067 kb on - strand at 3741.067 kb on - strand at 3741.097 kb on - strand at 3741.326 kb on - strand, within ECD_03556 at 3741.349 kb on - strand at 3741.349 kb on - strand at 3741.349 kb on - strand at 3741.349 kb on - strand at 3741.385 kb on + strand at 3741.386 kb on - strand at 3741.390 kb on - strand at 3741.390 kb on - strand at 3741.546 kb on + strand at 3741.547 kb on + strand at 3741.548 kb on - strand at 3741.548 kb on - strand at 3741.550 kb on + strand at 3741.550 kb on + strand at 3741.550 kb on + strand at 3741.550 kb on + strand at 3741.551 kb on - strand at 3741.551 kb on - strand at 3741.551 kb on - strand at 3741.567 kb on + strand at 3741.567 kb on + strand at 3741.570 kb on - strand at 3741.614 kb on + strand at 3741.614 kb on + strand at 3741.619 kb on - strand at 3741.625 kb on + strand at 3741.626 kb on - strand at 3741.691 kb on + strand, within ECD_04379 at 3741.693 kb on + strand, within ECD_04379 at 3741.693 kb on + strand, within ECD_04379 at 3741.705 kb on - strand, within ECD_04379 at 3741.705 kb on - strand, within ECD_04379 at 3741.747 kb on + strand, within ECD_04379 at 3741.784 kb on + strand at 3741.808 kb on + strand at 3741.808 kb on + strand at 3741.808 kb on + strand at 3741.808 kb on + strand at 3741.808 kb on + strand at 3741.809 kb on - strand at 3741.809 kb on - strand at 3741.879 kb on + strand at 3741.879 kb on + strand at 3741.879 kb on + strand at 3741.880 kb on - strand at 3741.919 kb on - strand at 3741.919 kb on - strand at 3741.919 kb on - strand at 3742.062 kb on + strand at 3742.062 kb on + strand at 3742.111 kb on + strand at 3742.153 kb on + strand at 3742.187 kb on + strand at 3742.187 kb on + strand at 3742.188 kb on - strand at 3742.188 kb on - strand at 3742.235 kb on - strand at 3742.247 kb on - strand at 3742.260 kb on - strand at 3742.316 kb on + strand at 3742.328 kb on + strand at 3742.331 kb on + strand at 3742.331 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 3,740,312 - ECD_03555 0.50 -0.5 3,740,337 + ECD_03555 0.52 -0.4 3,740,338 - ECD_03555 0.52 +0.1 3,740,340 - ECD_03555 0.52 -0.2 3,740,374 - ECD_03555 0.54 +0.0 3,740,502 - ECD_03555 0.62 +0.5 3,740,563 - ECD_03555 0.65 +0.7 3,740,637 + ECD_03555 0.70 -0.1 3,740,643 + ECD_03555 0.70 +0.5 3,740,644 - ECD_03555 0.70 +0.7 3,740,647 + ECD_03555 0.70 -1.4 3,740,647 + ECD_03555 0.70 -0.9 3,740,647 + ECD_03555 0.70 -0.1 3,740,647 + ECD_03555 0.70 -0.2 3,740,648 - ECD_03555 0.70 -0.4 3,740,721 + ECD_03555 0.75 +0.4 3,740,735 + ECD_03555 0.75 +0.1 3,740,735 + ECD_03555 0.75 +2.0 3,740,736 - ECD_03555 0.75 -0.0 3,740,758 - ECD_03555 0.77 +0.1 3,740,769 - ECD_03555 0.77 +0.5 3,740,901 + ECD_03555 0.85 -0.1 3,740,988 + -0.7 3,741,014 - +1.2 3,741,037 - +0.3 3,741,037 - -0.3 3,741,037 - +2.1 3,741,037 - +0.3 3,741,066 + -0.5 3,741,066 + +0.9 3,741,067 - +0.4 3,741,067 - -1.4 3,741,097 - -2.4 3,741,326 - ECD_03556 0.71 -1.3 3,741,349 - -2.1 3,741,349 - -0.4 3,741,349 - -0.4 3,741,349 - +0.8 3,741,385 + +0.2 3,741,386 - +0.1 3,741,390 - +0.4 3,741,390 - +0.9 3,741,546 + -0.0 3,741,547 + -1.6 3,741,548 - +1.0 3,741,548 - +0.9 3,741,550 + -0.5 3,741,550 + +0.7 3,741,550 + -0.5 3,741,550 + -0.8 3,741,551 - +0.0 3,741,551 - -0.0 3,741,551 - -0.2 3,741,567 + -0.6 3,741,567 + +0.0 3,741,570 - -1.1 3,741,614 + +0.4 3,741,614 + -0.0 3,741,619 - -0.5 3,741,625 + -0.0 3,741,626 - +0.6 3,741,691 + ECD_04379 0.40 +0.4 3,741,693 + ECD_04379 0.41 +0.1 3,741,693 + ECD_04379 0.41 -0.6 3,741,705 - ECD_04379 0.48 +0.4 3,741,705 - ECD_04379 0.48 +0.3 3,741,747 + ECD_04379 0.75 +0.6 3,741,784 + -0.1 3,741,808 + +0.8 3,741,808 + -0.5 3,741,808 + +0.6 3,741,808 + -0.6 3,741,808 + +1.5 3,741,809 - +0.5 3,741,809 - +1.6 3,741,879 + +0.2 3,741,879 + +0.8 3,741,879 + +0.1 3,741,880 - +0.6 3,741,919 - -0.2 3,741,919 - +0.2 3,741,919 - +1.8 3,742,062 + -0.8 3,742,062 + +0.2 3,742,111 + +0.6 3,742,153 + +1.3 3,742,187 + +0.1 3,742,187 + -1.5 3,742,188 - +0.9 3,742,188 - -0.6 3,742,235 - +0.3 3,742,247 - +0.2 3,742,260 - -0.2 3,742,316 + -0.4 3,742,328 + +0.1 3,742,331 + +1.5 3,742,331 + -0.8
Or see this region's nucleotide sequence