Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03420 and ECD_03421 are separated by 77 nucleotides
ECD_03420: ECD_03420 - D-xylose ABC transporter permease, at 3,595,872 to 3,597,053
_03420
ECD_03421: ECD_03421 - xylose divergent operon transcriptional activator, at 3,597,131 to 3,598,309
_03421
Position (kb)
3595
3596
3597
3598 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3594.872 kb on - strand at 3594.905 kb on + strand at 3594.938 kb on + strand at 3594.939 kb on - strand at 3594.944 kb on + strand at 3595.055 kb on + strand at 3595.055 kb on + strand at 3595.092 kb on + strand at 3595.109 kb on + strand at 3595.109 kb on + strand at 3595.109 kb on + strand at 3595.110 kb on - strand at 3595.110 kb on - strand at 3595.110 kb on - strand at 3595.129 kb on + strand at 3595.173 kb on - strand at 3595.175 kb on + strand at 3595.176 kb on - strand at 3595.184 kb on + strand at 3595.185 kb on - strand at 3595.185 kb on - strand at 3595.313 kb on + strand at 3595.330 kb on + strand at 3595.334 kb on + strand at 3595.340 kb on + strand at 3595.340 kb on + strand at 3595.436 kb on + strand at 3595.558 kb on + strand at 3595.676 kb on + strand at 3595.677 kb on - strand at 3595.686 kb on - strand at 3595.686 kb on - strand at 3595.692 kb on + strand at 3595.692 kb on + strand at 3595.693 kb on - strand at 3595.693 kb on - strand at 3595.717 kb on + strand at 3595.746 kb on + strand at 3595.800 kb on + strand at 3595.800 kb on + strand at 3595.977 kb on - strand at 3595.977 kb on - strand at 3596.023 kb on - strand, within ECD_03420 at 3596.023 kb on - strand, within ECD_03420 at 3596.023 kb on - strand, within ECD_03420 at 3596.027 kb on - strand, within ECD_03420 at 3596.104 kb on + strand, within ECD_03420 at 3596.149 kb on + strand, within ECD_03420 at 3596.152 kb on + strand, within ECD_03420 at 3596.152 kb on + strand, within ECD_03420 at 3596.152 kb on + strand, within ECD_03420 at 3596.152 kb on + strand, within ECD_03420 at 3596.153 kb on - strand, within ECD_03420 at 3596.153 kb on - strand, within ECD_03420 at 3596.153 kb on - strand, within ECD_03420 at 3596.204 kb on + strand, within ECD_03420 at 3596.204 kb on + strand, within ECD_03420 at 3596.204 kb on + strand, within ECD_03420 at 3596.204 kb on + strand, within ECD_03420 at 3596.204 kb on + strand, within ECD_03420 at 3596.205 kb on - strand, within ECD_03420 at 3596.205 kb on - strand, within ECD_03420 at 3596.205 kb on - strand, within ECD_03420 at 3596.205 kb on - strand, within ECD_03420 at 3596.205 kb on - strand, within ECD_03420 at 3596.205 kb on - strand, within ECD_03420 at 3596.205 kb on - strand, within ECD_03420 at 3596.206 kb on - strand, within ECD_03420 at 3596.289 kb on - strand, within ECD_03420 at 3596.289 kb on - strand, within ECD_03420 at 3596.327 kb on - strand, within ECD_03420 at 3596.327 kb on - strand, within ECD_03420 at 3596.398 kb on - strand, within ECD_03420 at 3596.398 kb on - strand, within ECD_03420 at 3596.398 kb on - strand, within ECD_03420 at 3596.398 kb on - strand, within ECD_03420 at 3596.398 kb on - strand, within ECD_03420 at 3596.398 kb on - strand, within ECD_03420 at 3596.398 kb on - strand, within ECD_03420 at 3596.402 kb on - strand, within ECD_03420 at 3596.514 kb on - strand, within ECD_03420 at 3596.514 kb on - strand, within ECD_03420 at 3596.514 kb on - strand, within ECD_03420 at 3596.521 kb on + strand, within ECD_03420 at 3596.554 kb on + strand, within ECD_03420 at 3596.554 kb on + strand, within ECD_03420 at 3596.555 kb on - strand, within ECD_03420 at 3596.676 kb on + strand, within ECD_03420 at 3596.676 kb on + strand, within ECD_03420 at 3596.792 kb on + strand, within ECD_03420 at 3596.914 kb on + strand, within ECD_03420 at 3596.915 kb on - strand, within ECD_03420 at 3596.927 kb on + strand, within ECD_03420 at 3596.928 kb on - strand, within ECD_03420 at 3596.928 kb on - strand, within ECD_03420 at 3596.957 kb on + strand at 3596.957 kb on + strand at 3596.957 kb on + strand at 3596.958 kb on - strand at 3596.958 kb on - strand at 3596.958 kb on - strand at 3596.969 kb on - strand at 3596.985 kb on + strand at 3596.985 kb on + strand at 3596.985 kb on + strand at 3596.985 kb on + strand at 3596.985 kb on + strand at 3596.985 kb on + strand at 3596.986 kb on - strand at 3596.986 kb on - strand at 3596.987 kb on + strand at 3597.020 kb on - strand at 3597.086 kb on + strand at 3597.086 kb on + strand at 3597.086 kb on + strand at 3597.086 kb on + strand at 3597.086 kb on + strand at 3597.086 kb on + strand at 3597.087 kb on - strand at 3597.159 kb on + strand at 3597.160 kb on - strand at 3597.182 kb on + strand at 3597.182 kb on + strand at 3597.183 kb on - strand at 3597.183 kb on - strand at 3597.198 kb on + strand at 3597.198 kb on + strand at 3597.198 kb on + strand at 3597.198 kb on + strand at 3597.198 kb on + strand at 3597.199 kb on - strand at 3597.199 kb on - strand at 3597.199 kb on - strand at 3597.199 kb on - strand at 3597.216 kb on - strand at 3597.219 kb on + strand at 3597.245 kb on - strand at 3597.389 kb on + strand, within ECD_03421 at 3597.422 kb on + strand, within ECD_03421 at 3597.422 kb on + strand, within ECD_03421 at 3597.422 kb on + strand, within ECD_03421 at 3597.422 kb on + strand, within ECD_03421 at 3597.423 kb on - strand, within ECD_03421 at 3597.437 kb on - strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.440 kb on + strand, within ECD_03421 at 3597.441 kb on - strand, within ECD_03421 at 3597.441 kb on - strand, within ECD_03421 at 3597.441 kb on - strand, within ECD_03421 at 3597.441 kb on - strand, within ECD_03421 at 3597.441 kb on - strand, within ECD_03421 at 3597.472 kb on - strand, within ECD_03421 at 3597.503 kb on + strand, within ECD_03421 at 3597.551 kb on + strand, within ECD_03421 at 3597.663 kb on + strand, within ECD_03421 at 3597.663 kb on + strand, within ECD_03421 at 3597.691 kb on + strand, within ECD_03421 at 3597.721 kb on + strand, within ECD_03421 at 3597.721 kb on + strand, within ECD_03421 at 3597.721 kb on + strand, within ECD_03421 at 3597.722 kb on - strand, within ECD_03421 at 3597.732 kb on + strand, within ECD_03421 at 3597.732 kb on + strand, within ECD_03421 at 3597.732 kb on + strand, within ECD_03421 at 3597.732 kb on + strand, within ECD_03421 at 3597.733 kb on - strand, within ECD_03421 at 3597.733 kb on - strand, within ECD_03421 at 3597.733 kb on - strand, within ECD_03421 at 3597.733 kb on - strand, within ECD_03421 at 3597.733 kb on - strand, within ECD_03421 at 3597.744 kb on + strand, within ECD_03421 at 3597.744 kb on + strand, within ECD_03421 at 3597.744 kb on + strand, within ECD_03421 at 3597.744 kb on + strand, within ECD_03421 at 3597.744 kb on + strand, within ECD_03421 at 3597.744 kb on + strand, within ECD_03421 at 3597.745 kb on - strand, within ECD_03421 at 3597.745 kb on - strand, within ECD_03421 at 3597.745 kb on - strand, within ECD_03421 at 3597.745 kb on - strand, within ECD_03421 at 3597.748 kb on + strand, within ECD_03421 at 3597.748 kb on + strand, within ECD_03421 at 3597.748 kb on + strand, within ECD_03421 at 3597.749 kb on - strand, within ECD_03421 at 3597.888 kb on + strand, within ECD_03421 at 3597.891 kb on + strand, within ECD_03421 at 3597.891 kb on + strand, within ECD_03421 at 3597.892 kb on - strand, within ECD_03421 at 3597.895 kb on + strand, within ECD_03421 at 3597.895 kb on + strand, within ECD_03421 at 3597.896 kb on - strand, within ECD_03421 at 3598.007 kb on + strand, within ECD_03421 at 3598.007 kb on + strand, within ECD_03421 at 3598.008 kb on - strand, within ECD_03421 at 3598.016 kb on - strand, within ECD_03421 at 3598.036 kb on + strand, within ECD_03421 at 3598.050 kb on + strand, within ECD_03421
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 3,594,872 - -0.2 3,594,905 + +0.1 3,594,938 + -0.3 3,594,939 - +0.9 3,594,944 + -0.3 3,595,055 + -0.1 3,595,055 + -0.2 3,595,092 + -0.3 3,595,109 + -0.1 3,595,109 + -0.4 3,595,109 + +0.2 3,595,110 - -0.1 3,595,110 - -0.9 3,595,110 - +0.0 3,595,129 + +1.3 3,595,173 - -1.3 3,595,175 + -2.0 3,595,176 - +0.3 3,595,184 + -0.3 3,595,185 - +0.6 3,595,185 - -1.5 3,595,313 + -0.2 3,595,330 + -0.8 3,595,334 + +0.5 3,595,340 + +1.2 3,595,340 + -0.4 3,595,436 + -0.4 3,595,558 + +0.2 3,595,676 + +1.0 3,595,677 - +0.2 3,595,686 - -0.1 3,595,686 - +0.4 3,595,692 + +0.1 3,595,692 + -0.3 3,595,693 - +0.4 3,595,693 - +0.2 3,595,717 + +1.1 3,595,746 + -1.0 3,595,800 + -0.6 3,595,800 + +0.4 3,595,977 - -1.1 3,595,977 - -0.3 3,596,023 - ECD_03420 0.13 -0.2 3,596,023 - ECD_03420 0.13 -0.2 3,596,023 - ECD_03420 0.13 -1.2 3,596,027 - ECD_03420 0.13 -0.5 3,596,104 + ECD_03420 0.20 -0.4 3,596,149 + ECD_03420 0.23 -0.5 3,596,152 + ECD_03420 0.24 -0.9 3,596,152 + ECD_03420 0.24 +0.1 3,596,152 + ECD_03420 0.24 +0.1 3,596,152 + ECD_03420 0.24 +0.8 3,596,153 - ECD_03420 0.24 +0.1 3,596,153 - ECD_03420 0.24 -1.3 3,596,153 - ECD_03420 0.24 -0.3 3,596,204 + ECD_03420 0.28 +1.1 3,596,204 + ECD_03420 0.28 -0.3 3,596,204 + ECD_03420 0.28 -0.4 3,596,204 + ECD_03420 0.28 -1.3 3,596,204 + ECD_03420 0.28 -1.4 3,596,205 - ECD_03420 0.28 +0.5 3,596,205 - ECD_03420 0.28 +0.2 3,596,205 - ECD_03420 0.28 -0.4 3,596,205 - ECD_03420 0.28 +0.0 3,596,205 - ECD_03420 0.28 +1.4 3,596,205 - ECD_03420 0.28 +0.5 3,596,205 - ECD_03420 0.28 -0.0 3,596,206 - ECD_03420 0.28 +0.1 3,596,289 - ECD_03420 0.35 -0.0 3,596,289 - ECD_03420 0.35 +1.4 3,596,327 - ECD_03420 0.38 +0.5 3,596,327 - ECD_03420 0.38 -1.6 3,596,398 - ECD_03420 0.45 -0.5 3,596,398 - ECD_03420 0.45 +0.5 3,596,398 - ECD_03420 0.45 -0.3 3,596,398 - ECD_03420 0.45 -0.0 3,596,398 - ECD_03420 0.45 -0.3 3,596,398 - ECD_03420 0.45 -2.4 3,596,398 - ECD_03420 0.45 +0.2 3,596,402 - ECD_03420 0.45 -0.9 3,596,514 - ECD_03420 0.54 +0.0 3,596,514 - ECD_03420 0.54 -0.1 3,596,514 - ECD_03420 0.54 +0.6 3,596,521 + ECD_03420 0.55 -1.0 3,596,554 + ECD_03420 0.58 +1.3 3,596,554 + ECD_03420 0.58 -0.1 3,596,555 - ECD_03420 0.58 -0.7 3,596,676 + ECD_03420 0.68 +0.4 3,596,676 + ECD_03420 0.68 +0.1 3,596,792 + ECD_03420 0.78 +0.1 3,596,914 + ECD_03420 0.88 +1.0 3,596,915 - ECD_03420 0.88 +1.9 3,596,927 + ECD_03420 0.89 -0.9 3,596,928 - ECD_03420 0.89 -0.1 3,596,928 - ECD_03420 0.89 -0.3 3,596,957 + -1.3 3,596,957 + +0.6 3,596,957 + -0.7 3,596,958 - -0.6 3,596,958 - +1.1 3,596,958 - +0.4 3,596,969 - +0.2 3,596,985 + +0.6 3,596,985 + +0.0 3,596,985 + -1.1 3,596,985 + -0.0 3,596,985 + +0.3 3,596,985 + -0.4 3,596,986 - +1.3 3,596,986 - -0.0 3,596,987 + +0.3 3,597,020 - +0.2 3,597,086 + -0.7 3,597,086 + +0.5 3,597,086 + +0.5 3,597,086 + -0.8 3,597,086 + -0.1 3,597,086 + +0.9 3,597,087 - +0.2 3,597,159 + +0.0 3,597,160 - +0.4 3,597,182 + +0.3 3,597,182 + +0.1 3,597,183 - -0.1 3,597,183 - +0.3 3,597,198 + -0.0 3,597,198 + +0.1 3,597,198 + -0.2 3,597,198 + -0.4 3,597,198 + +0.8 3,597,199 - +0.0 3,597,199 - +0.3 3,597,199 - +0.0 3,597,199 - -0.1 3,597,216 - +0.7 3,597,219 + +0.7 3,597,245 - +0.9 3,597,389 + ECD_03421 0.22 +0.0 3,597,422 + ECD_03421 0.25 -0.7 3,597,422 + ECD_03421 0.25 -2.1 3,597,422 + ECD_03421 0.25 +0.7 3,597,422 + ECD_03421 0.25 +1.0 3,597,423 - ECD_03421 0.25 -0.1 3,597,437 - ECD_03421 0.26 +1.3 3,597,440 + ECD_03421 0.26 +0.9 3,597,440 + ECD_03421 0.26 +0.3 3,597,440 + ECD_03421 0.26 -0.5 3,597,440 + ECD_03421 0.26 -0.2 3,597,440 + ECD_03421 0.26 -1.0 3,597,440 + ECD_03421 0.26 +0.8 3,597,440 + ECD_03421 0.26 -0.2 3,597,440 + ECD_03421 0.26 +0.9 3,597,441 - ECD_03421 0.26 +0.0 3,597,441 - ECD_03421 0.26 -1.3 3,597,441 - ECD_03421 0.26 +1.2 3,597,441 - ECD_03421 0.26 +0.8 3,597,441 - ECD_03421 0.26 +0.2 3,597,472 - ECD_03421 0.29 +0.4 3,597,503 + ECD_03421 0.32 +0.2 3,597,551 + ECD_03421 0.36 -0.8 3,597,663 + ECD_03421 0.45 +0.2 3,597,663 + ECD_03421 0.45 -0.6 3,597,691 + ECD_03421 0.47 +0.2 3,597,721 + ECD_03421 0.50 +1.0 3,597,721 + ECD_03421 0.50 +0.2 3,597,721 + ECD_03421 0.50 -0.7 3,597,722 - ECD_03421 0.50 -2.0 3,597,732 + ECD_03421 0.51 -0.3 3,597,732 + ECD_03421 0.51 -0.2 3,597,732 + ECD_03421 0.51 +0.8 3,597,732 + ECD_03421 0.51 -1.0 3,597,733 - ECD_03421 0.51 -0.7 3,597,733 - ECD_03421 0.51 +0.3 3,597,733 - ECD_03421 0.51 -0.2 3,597,733 - ECD_03421 0.51 -0.8 3,597,733 - ECD_03421 0.51 +0.3 3,597,744 + ECD_03421 0.52 +0.3 3,597,744 + ECD_03421 0.52 -0.2 3,597,744 + ECD_03421 0.52 +0.3 3,597,744 + ECD_03421 0.52 +0.7 3,597,744 + ECD_03421 0.52 -0.2 3,597,744 + ECD_03421 0.52 -1.6 3,597,745 - ECD_03421 0.52 +0.6 3,597,745 - ECD_03421 0.52 +0.5 3,597,745 - ECD_03421 0.52 -2.3 3,597,745 - ECD_03421 0.52 -0.7 3,597,748 + ECD_03421 0.52 +1.2 3,597,748 + ECD_03421 0.52 -0.3 3,597,748 + ECD_03421 0.52 +0.1 3,597,749 - ECD_03421 0.52 +0.2 3,597,888 + ECD_03421 0.64 +1.0 3,597,891 + ECD_03421 0.64 -0.4 3,597,891 + ECD_03421 0.64 -0.5 3,597,892 - ECD_03421 0.65 +1.1 3,597,895 + ECD_03421 0.65 +0.3 3,597,895 + ECD_03421 0.65 +0.4 3,597,896 - ECD_03421 0.65 -1.0 3,598,007 + ECD_03421 0.74 -1.1 3,598,007 + ECD_03421 0.74 -0.6 3,598,008 - ECD_03421 0.74 +0.4 3,598,016 - ECD_03421 0.75 +0.4 3,598,036 + ECD_03421 0.77 +0.1 3,598,050 + ECD_03421 0.78 -1.6
Or see this region's nucleotide sequence