Strain Fitness in Escherichia coli BL21 around ECD_03420

Experiment: Bas50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03420 and ECD_03421 are separated by 77 nucleotides ECD_03420: ECD_03420 - D-xylose ABC transporter permease, at 3,595,872 to 3,597,053 _03420 ECD_03421: ECD_03421 - xylose divergent operon transcriptional activator, at 3,597,131 to 3,598,309 _03421 Position (kb) 3595 3596 3597 3598Strain fitness (log2 ratio) -2 -1 0 1 2at 3594.872 kb on - strandat 3594.905 kb on + strandat 3594.938 kb on + strandat 3594.939 kb on - strandat 3594.944 kb on + strandat 3595.055 kb on + strandat 3595.055 kb on + strandat 3595.092 kb on + strandat 3595.109 kb on + strandat 3595.109 kb on + strandat 3595.109 kb on + strandat 3595.110 kb on - strandat 3595.110 kb on - strandat 3595.110 kb on - strandat 3595.129 kb on + strandat 3595.173 kb on - strandat 3595.175 kb on + strandat 3595.176 kb on - strandat 3595.184 kb on + strandat 3595.185 kb on - strandat 3595.185 kb on - strandat 3595.313 kb on + strandat 3595.330 kb on + strandat 3595.334 kb on + strandat 3595.340 kb on + strandat 3595.340 kb on + strandat 3595.436 kb on + strandat 3595.558 kb on + strandat 3595.676 kb on + strandat 3595.677 kb on - strandat 3595.686 kb on - strandat 3595.686 kb on - strandat 3595.692 kb on + strandat 3595.692 kb on + strandat 3595.693 kb on - strandat 3595.693 kb on - strandat 3595.717 kb on + strandat 3595.746 kb on + strandat 3595.800 kb on + strandat 3595.800 kb on + strandat 3595.977 kb on - strandat 3595.977 kb on - strandat 3596.023 kb on - strand, within ECD_03420at 3596.023 kb on - strand, within ECD_03420at 3596.023 kb on - strand, within ECD_03420at 3596.027 kb on - strand, within ECD_03420at 3596.104 kb on + strand, within ECD_03420at 3596.149 kb on + strand, within ECD_03420at 3596.152 kb on + strand, within ECD_03420at 3596.152 kb on + strand, within ECD_03420at 3596.152 kb on + strand, within ECD_03420at 3596.152 kb on + strand, within ECD_03420at 3596.153 kb on - strand, within ECD_03420at 3596.153 kb on - strand, within ECD_03420at 3596.153 kb on - strand, within ECD_03420at 3596.204 kb on + strand, within ECD_03420at 3596.204 kb on + strand, within ECD_03420at 3596.204 kb on + strand, within ECD_03420at 3596.204 kb on + strand, within ECD_03420at 3596.204 kb on + strand, within ECD_03420at 3596.205 kb on - strand, within ECD_03420at 3596.205 kb on - strand, within ECD_03420at 3596.205 kb on - strand, within ECD_03420at 3596.205 kb on - strand, within ECD_03420at 3596.205 kb on - strand, within ECD_03420at 3596.205 kb on - strand, within ECD_03420at 3596.205 kb on - strand, within ECD_03420at 3596.206 kb on - strand, within ECD_03420at 3596.289 kb on - strand, within ECD_03420at 3596.289 kb on - strand, within ECD_03420at 3596.327 kb on - strand, within ECD_03420at 3596.327 kb on - strand, within ECD_03420at 3596.398 kb on - strand, within ECD_03420at 3596.398 kb on - strand, within ECD_03420at 3596.398 kb on - strand, within ECD_03420at 3596.398 kb on - strand, within ECD_03420at 3596.398 kb on - strand, within ECD_03420at 3596.398 kb on - strand, within ECD_03420at 3596.398 kb on - strand, within ECD_03420at 3596.402 kb on - strand, within ECD_03420at 3596.514 kb on - strand, within ECD_03420at 3596.514 kb on - strand, within ECD_03420at 3596.514 kb on - strand, within ECD_03420at 3596.521 kb on + strand, within ECD_03420at 3596.554 kb on + strand, within ECD_03420at 3596.554 kb on + strand, within ECD_03420at 3596.555 kb on - strand, within ECD_03420at 3596.676 kb on + strand, within ECD_03420at 3596.676 kb on + strand, within ECD_03420at 3596.792 kb on + strand, within ECD_03420at 3596.914 kb on + strand, within ECD_03420at 3596.915 kb on - strand, within ECD_03420at 3596.927 kb on + strand, within ECD_03420at 3596.928 kb on - strand, within ECD_03420at 3596.928 kb on - strand, within ECD_03420at 3596.957 kb on + strandat 3596.957 kb on + strandat 3596.957 kb on + strandat 3596.958 kb on - strandat 3596.958 kb on - strandat 3596.958 kb on - strandat 3596.969 kb on - strandat 3596.985 kb on + strandat 3596.985 kb on + strandat 3596.985 kb on + strandat 3596.985 kb on + strandat 3596.985 kb on + strandat 3596.985 kb on + strandat 3596.986 kb on - strandat 3596.986 kb on - strandat 3596.987 kb on + strandat 3597.020 kb on - strandat 3597.086 kb on + strandat 3597.086 kb on + strandat 3597.086 kb on + strandat 3597.086 kb on + strandat 3597.086 kb on + strandat 3597.086 kb on + strandat 3597.087 kb on - strandat 3597.159 kb on + strandat 3597.160 kb on - strandat 3597.182 kb on + strandat 3597.182 kb on + strandat 3597.183 kb on - strandat 3597.183 kb on - strandat 3597.198 kb on + strandat 3597.198 kb on + strandat 3597.198 kb on + strandat 3597.198 kb on + strandat 3597.198 kb on + strandat 3597.199 kb on - strandat 3597.199 kb on - strandat 3597.199 kb on - strandat 3597.199 kb on - strandat 3597.216 kb on - strandat 3597.219 kb on + strandat 3597.245 kb on - strandat 3597.389 kb on + strand, within ECD_03421at 3597.422 kb on + strand, within ECD_03421at 3597.422 kb on + strand, within ECD_03421at 3597.422 kb on + strand, within ECD_03421at 3597.422 kb on + strand, within ECD_03421at 3597.423 kb on - strand, within ECD_03421at 3597.437 kb on - strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.441 kb on - strand, within ECD_03421at 3597.441 kb on - strand, within ECD_03421at 3597.441 kb on - strand, within ECD_03421at 3597.441 kb on - strand, within ECD_03421at 3597.441 kb on - strand, within ECD_03421at 3597.472 kb on - strand, within ECD_03421at 3597.503 kb on + strand, within ECD_03421at 3597.551 kb on + strand, within ECD_03421at 3597.663 kb on + strand, within ECD_03421at 3597.663 kb on + strand, within ECD_03421at 3597.691 kb on + strand, within ECD_03421at 3597.721 kb on + strand, within ECD_03421at 3597.721 kb on + strand, within ECD_03421at 3597.721 kb on + strand, within ECD_03421at 3597.722 kb on - strand, within ECD_03421at 3597.732 kb on + strand, within ECD_03421at 3597.732 kb on + strand, within ECD_03421at 3597.732 kb on + strand, within ECD_03421at 3597.732 kb on + strand, within ECD_03421at 3597.733 kb on - strand, within ECD_03421at 3597.733 kb on - strand, within ECD_03421at 3597.733 kb on - strand, within ECD_03421at 3597.733 kb on - strand, within ECD_03421at 3597.733 kb on - strand, within ECD_03421at 3597.744 kb on + strand, within ECD_03421at 3597.744 kb on + strand, within ECD_03421at 3597.744 kb on + strand, within ECD_03421at 3597.744 kb on + strand, within ECD_03421at 3597.744 kb on + strand, within ECD_03421at 3597.744 kb on + strand, within ECD_03421at 3597.745 kb on - strand, within ECD_03421at 3597.745 kb on - strand, within ECD_03421at 3597.745 kb on - strand, within ECD_03421at 3597.745 kb on - strand, within ECD_03421at 3597.748 kb on + strand, within ECD_03421at 3597.748 kb on + strand, within ECD_03421at 3597.748 kb on + strand, within ECD_03421at 3597.749 kb on - strand, within ECD_03421at 3597.888 kb on + strand, within ECD_03421at 3597.891 kb on + strand, within ECD_03421at 3597.891 kb on + strand, within ECD_03421at 3597.892 kb on - strand, within ECD_03421at 3597.895 kb on + strand, within ECD_03421at 3597.895 kb on + strand, within ECD_03421at 3597.896 kb on - strand, within ECD_03421at 3598.007 kb on + strand, within ECD_03421at 3598.007 kb on + strand, within ECD_03421at 3598.008 kb on - strand, within ECD_03421at 3598.016 kb on - strand, within ECD_03421at 3598.036 kb on + strand, within ECD_03421at 3598.050 kb on + strand, within ECD_03421

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
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3,594,872 - -0.2
3,594,905 + +0.1
3,594,938 + -0.3
3,594,939 - +0.9
3,594,944 + -0.3
3,595,055 + -0.1
3,595,055 + -0.2
3,595,092 + -0.3
3,595,109 + -0.1
3,595,109 + -0.4
3,595,109 + +0.2
3,595,110 - -0.1
3,595,110 - -0.9
3,595,110 - +0.0
3,595,129 + +1.3
3,595,173 - -1.3
3,595,175 + -2.0
3,595,176 - +0.3
3,595,184 + -0.3
3,595,185 - +0.6
3,595,185 - -1.5
3,595,313 + -0.2
3,595,330 + -0.8
3,595,334 + +0.5
3,595,340 + +1.2
3,595,340 + -0.4
3,595,436 + -0.4
3,595,558 + +0.2
3,595,676 + +1.0
3,595,677 - +0.2
3,595,686 - -0.1
3,595,686 - +0.4
3,595,692 + +0.1
3,595,692 + -0.3
3,595,693 - +0.4
3,595,693 - +0.2
3,595,717 + +1.1
3,595,746 + -1.0
3,595,800 + -0.6
3,595,800 + +0.4
3,595,977 - -1.1
3,595,977 - -0.3
3,596,023 - ECD_03420 0.13 -0.2
3,596,023 - ECD_03420 0.13 -0.2
3,596,023 - ECD_03420 0.13 -1.2
3,596,027 - ECD_03420 0.13 -0.5
3,596,104 + ECD_03420 0.20 -0.4
3,596,149 + ECD_03420 0.23 -0.5
3,596,152 + ECD_03420 0.24 -0.9
3,596,152 + ECD_03420 0.24 +0.1
3,596,152 + ECD_03420 0.24 +0.1
3,596,152 + ECD_03420 0.24 +0.8
3,596,153 - ECD_03420 0.24 +0.1
3,596,153 - ECD_03420 0.24 -1.3
3,596,153 - ECD_03420 0.24 -0.3
3,596,204 + ECD_03420 0.28 +1.1
3,596,204 + ECD_03420 0.28 -0.3
3,596,204 + ECD_03420 0.28 -0.4
3,596,204 + ECD_03420 0.28 -1.3
3,596,204 + ECD_03420 0.28 -1.4
3,596,205 - ECD_03420 0.28 +0.5
3,596,205 - ECD_03420 0.28 +0.2
3,596,205 - ECD_03420 0.28 -0.4
3,596,205 - ECD_03420 0.28 +0.0
3,596,205 - ECD_03420 0.28 +1.4
3,596,205 - ECD_03420 0.28 +0.5
3,596,205 - ECD_03420 0.28 -0.0
3,596,206 - ECD_03420 0.28 +0.1
3,596,289 - ECD_03420 0.35 -0.0
3,596,289 - ECD_03420 0.35 +1.4
3,596,327 - ECD_03420 0.38 +0.5
3,596,327 - ECD_03420 0.38 -1.6
3,596,398 - ECD_03420 0.45 -0.5
3,596,398 - ECD_03420 0.45 +0.5
3,596,398 - ECD_03420 0.45 -0.3
3,596,398 - ECD_03420 0.45 -0.0
3,596,398 - ECD_03420 0.45 -0.3
3,596,398 - ECD_03420 0.45 -2.4
3,596,398 - ECD_03420 0.45 +0.2
3,596,402 - ECD_03420 0.45 -0.9
3,596,514 - ECD_03420 0.54 +0.0
3,596,514 - ECD_03420 0.54 -0.1
3,596,514 - ECD_03420 0.54 +0.6
3,596,521 + ECD_03420 0.55 -1.0
3,596,554 + ECD_03420 0.58 +1.3
3,596,554 + ECD_03420 0.58 -0.1
3,596,555 - ECD_03420 0.58 -0.7
3,596,676 + ECD_03420 0.68 +0.4
3,596,676 + ECD_03420 0.68 +0.1
3,596,792 + ECD_03420 0.78 +0.1
3,596,914 + ECD_03420 0.88 +1.0
3,596,915 - ECD_03420 0.88 +1.9
3,596,927 + ECD_03420 0.89 -0.9
3,596,928 - ECD_03420 0.89 -0.1
3,596,928 - ECD_03420 0.89 -0.3
3,596,957 + -1.3
3,596,957 + +0.6
3,596,957 + -0.7
3,596,958 - -0.6
3,596,958 - +1.1
3,596,958 - +0.4
3,596,969 - +0.2
3,596,985 + +0.6
3,596,985 + +0.0
3,596,985 + -1.1
3,596,985 + -0.0
3,596,985 + +0.3
3,596,985 + -0.4
3,596,986 - +1.3
3,596,986 - -0.0
3,596,987 + +0.3
3,597,020 - +0.2
3,597,086 + -0.7
3,597,086 + +0.5
3,597,086 + +0.5
3,597,086 + -0.8
3,597,086 + -0.1
3,597,086 + +0.9
3,597,087 - +0.2
3,597,159 + +0.0
3,597,160 - +0.4
3,597,182 + +0.3
3,597,182 + +0.1
3,597,183 - -0.1
3,597,183 - +0.3
3,597,198 + -0.0
3,597,198 + +0.1
3,597,198 + -0.2
3,597,198 + -0.4
3,597,198 + +0.8
3,597,199 - +0.0
3,597,199 - +0.3
3,597,199 - +0.0
3,597,199 - -0.1
3,597,216 - +0.7
3,597,219 + +0.7
3,597,245 - +0.9
3,597,389 + ECD_03421 0.22 +0.0
3,597,422 + ECD_03421 0.25 -0.7
3,597,422 + ECD_03421 0.25 -2.1
3,597,422 + ECD_03421 0.25 +0.7
3,597,422 + ECD_03421 0.25 +1.0
3,597,423 - ECD_03421 0.25 -0.1
3,597,437 - ECD_03421 0.26 +1.3
3,597,440 + ECD_03421 0.26 +0.9
3,597,440 + ECD_03421 0.26 +0.3
3,597,440 + ECD_03421 0.26 -0.5
3,597,440 + ECD_03421 0.26 -0.2
3,597,440 + ECD_03421 0.26 -1.0
3,597,440 + ECD_03421 0.26 +0.8
3,597,440 + ECD_03421 0.26 -0.2
3,597,440 + ECD_03421 0.26 +0.9
3,597,441 - ECD_03421 0.26 +0.0
3,597,441 - ECD_03421 0.26 -1.3
3,597,441 - ECD_03421 0.26 +1.2
3,597,441 - ECD_03421 0.26 +0.8
3,597,441 - ECD_03421 0.26 +0.2
3,597,472 - ECD_03421 0.29 +0.4
3,597,503 + ECD_03421 0.32 +0.2
3,597,551 + ECD_03421 0.36 -0.8
3,597,663 + ECD_03421 0.45 +0.2
3,597,663 + ECD_03421 0.45 -0.6
3,597,691 + ECD_03421 0.47 +0.2
3,597,721 + ECD_03421 0.50 +1.0
3,597,721 + ECD_03421 0.50 +0.2
3,597,721 + ECD_03421 0.50 -0.7
3,597,722 - ECD_03421 0.50 -2.0
3,597,732 + ECD_03421 0.51 -0.3
3,597,732 + ECD_03421 0.51 -0.2
3,597,732 + ECD_03421 0.51 +0.8
3,597,732 + ECD_03421 0.51 -1.0
3,597,733 - ECD_03421 0.51 -0.7
3,597,733 - ECD_03421 0.51 +0.3
3,597,733 - ECD_03421 0.51 -0.2
3,597,733 - ECD_03421 0.51 -0.8
3,597,733 - ECD_03421 0.51 +0.3
3,597,744 + ECD_03421 0.52 +0.3
3,597,744 + ECD_03421 0.52 -0.2
3,597,744 + ECD_03421 0.52 +0.3
3,597,744 + ECD_03421 0.52 +0.7
3,597,744 + ECD_03421 0.52 -0.2
3,597,744 + ECD_03421 0.52 -1.6
3,597,745 - ECD_03421 0.52 +0.6
3,597,745 - ECD_03421 0.52 +0.5
3,597,745 - ECD_03421 0.52 -2.3
3,597,745 - ECD_03421 0.52 -0.7
3,597,748 + ECD_03421 0.52 +1.2
3,597,748 + ECD_03421 0.52 -0.3
3,597,748 + ECD_03421 0.52 +0.1
3,597,749 - ECD_03421 0.52 +0.2
3,597,888 + ECD_03421 0.64 +1.0
3,597,891 + ECD_03421 0.64 -0.4
3,597,891 + ECD_03421 0.64 -0.5
3,597,892 - ECD_03421 0.65 +1.1
3,597,895 + ECD_03421 0.65 +0.3
3,597,895 + ECD_03421 0.65 +0.4
3,597,896 - ECD_03421 0.65 -1.0
3,598,007 + ECD_03421 0.74 -1.1
3,598,007 + ECD_03421 0.74 -0.6
3,598,008 - ECD_03421 0.74 +0.4
3,598,016 - ECD_03421 0.75 +0.4
3,598,036 + ECD_03421 0.77 +0.1
3,598,050 + ECD_03421 0.78 -1.6

Or see this region's nucleotide sequence