Strain Fitness in Escherichia coli BL21 around ECD_03063

Experiment: Bas50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03062 and ECD_03063 are separated by 20 nucleotidesECD_03063 and ECD_03064 overlap by 4 nucleotidesECD_03064 and ECD_03065 overlap by 32 nucleotides ECD_03062: ECD_03062 - D-arabinose 5-phosphate isomerase, at 3,209,766 to 3,210,752 _03062 ECD_03063: ECD_03063 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 3,210,773 to 3,211,339 _03063 ECD_03064: ECD_03064 - periplasmic membrane-anchored LPS-binding protein; LPS export protein, at 3,211,336 to 3,211,911 _03064 ECD_03065: ECD_03065 - lipopolysaccharide export ABC transporter periplasmic binding protein; Lipid A binding protein; LPS export and assembly protein, at 3,211,880 to 3,212,437 _03065 Position (kb) 3210 3211 3212Strain fitness (log2 ratio) -2 -1 0 1 2at 3209.776 kb on + strandat 3209.776 kb on + strandat 3209.783 kb on - strandat 3209.862 kb on + strandat 3209.862 kb on + strandat 3209.863 kb on - strandat 3210.077 kb on + strand, within ECD_03062at 3210.109 kb on + strand, within ECD_03062at 3210.110 kb on - strand, within ECD_03062at 3210.122 kb on + strand, within ECD_03062at 3210.122 kb on + strand, within ECD_03062at 3210.122 kb on + strand, within ECD_03062at 3210.137 kb on - strand, within ECD_03062at 3210.392 kb on + strand, within ECD_03062at 3210.392 kb on + strand, within ECD_03062at 3210.393 kb on - strand, within ECD_03062at 3210.422 kb on + strand, within ECD_03062at 3210.503 kb on + strand, within ECD_03062at 3210.503 kb on + strand, within ECD_03062at 3210.503 kb on + strand, within ECD_03062at 3210.503 kb on + strand, within ECD_03062at 3210.577 kb on + strand, within ECD_03062at 3210.577 kb on + strand, within ECD_03062at 3210.610 kb on + strand, within ECD_03062at 3210.652 kb on + strand, within ECD_03062at 3210.652 kb on + strand, within ECD_03062at 3210.652 kb on + strand, within ECD_03062at 3210.715 kb on + strandat 3210.715 kb on + strandat 3210.715 kb on + strandat 3210.715 kb on + strandat 3210.715 kb on + strandat 3210.715 kb on + strandat 3210.715 kb on + strandat 3210.715 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.719 kb on + strandat 3210.730 kb on + strandat 3210.899 kb on + strand, within ECD_03063at 3210.899 kb on + strand, within ECD_03063at 3210.899 kb on + strand, within ECD_03063at 3210.899 kb on + strand, within ECD_03063at 3211.058 kb on + strand, within ECD_03063at 3211.136 kb on + strand, within ECD_03063at 3211.287 kb on + strandat 3211.287 kb on + strandat 3211.287 kb on + strandat 3211.287 kb on + strandat 3211.287 kb on + strandat 3211.764 kb on + strand, within ECD_03064at 3211.764 kb on + strand, within ECD_03064at 3211.787 kb on + strand, within ECD_03064at 3211.789 kb on + strand, within ECD_03064

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
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3,209,776 + -0.3
3,209,776 + +0.3
3,209,783 - +0.7
3,209,862 + -1.1
3,209,862 + -1.6
3,209,863 - +0.3
3,210,077 + ECD_03062 0.32 -0.2
3,210,109 + ECD_03062 0.35 -0.0
3,210,110 - ECD_03062 0.35 -0.2
3,210,122 + ECD_03062 0.36 +0.3
3,210,122 + ECD_03062 0.36 +1.9
3,210,122 + ECD_03062 0.36 -0.2
3,210,137 - ECD_03062 0.38 -1.9
3,210,392 + ECD_03062 0.63 +0.1
3,210,392 + ECD_03062 0.63 +0.5
3,210,393 - ECD_03062 0.64 -0.3
3,210,422 + ECD_03062 0.66 +0.0
3,210,503 + ECD_03062 0.75 -0.1
3,210,503 + ECD_03062 0.75 -0.2
3,210,503 + ECD_03062 0.75 +0.2
3,210,503 + ECD_03062 0.75 -1.5
3,210,577 + ECD_03062 0.82 -0.0
3,210,577 + ECD_03062 0.82 +1.2
3,210,610 + ECD_03062 0.86 +0.0
3,210,652 + ECD_03062 0.90 -0.0
3,210,652 + ECD_03062 0.90 +0.8
3,210,652 + ECD_03062 0.90 -0.1
3,210,715 + +0.1
3,210,715 + +0.9
3,210,715 + -0.2
3,210,715 + -0.2
3,210,715 + +0.0
3,210,715 + +1.0
3,210,715 + +0.8
3,210,715 + +0.5
3,210,719 + +0.4
3,210,719 + +0.4
3,210,719 + +0.3
3,210,719 + -0.5
3,210,719 + +0.7
3,210,719 + -0.1
3,210,719 + -0.8
3,210,719 + -1.2
3,210,719 + +0.4
3,210,719 + +0.5
3,210,719 + -0.1
3,210,719 + -1.1
3,210,719 + -1.2
3,210,719 + -0.7
3,210,730 + -0.4
3,210,899 + ECD_03063 0.22 -1.1
3,210,899 + ECD_03063 0.22 -1.6
3,210,899 + ECD_03063 0.22 -0.5
3,210,899 + ECD_03063 0.22 -1.4
3,211,058 + ECD_03063 0.50 +0.7
3,211,136 + ECD_03063 0.64 +0.9
3,211,287 + -0.8
3,211,287 + -1.0
3,211,287 + -0.1
3,211,287 + -0.8
3,211,287 + +0.0
3,211,764 + ECD_03064 0.74 -1.1
3,211,764 + ECD_03064 0.74 -1.7
3,211,787 + ECD_03064 0.78 -1.0
3,211,789 + ECD_03064 0.79 -0.9

Or see this region's nucleotide sequence