Strain Fitness in Escherichia coli BL21 around ECD_02520

Experiment: Bas50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02519 and ECD_02520 are separated by 20 nucleotidesECD_02520 and ECD_02521 are separated by 0 nucleotidesECD_02521 and ECD_02522 are separated by 83 nucleotidesECD_02522 and ECD_02523 are separated by 182 nucleotides ECD_02519: ECD_02519 - gamma-aminobutyrate transporter, at 2,634,113 to 2,635,513 _02519 ECD_02520: ECD_02520 - transcriptional repressor of csiD, at 2,635,534 to 2,636,196 _02520 ECD_02521: ECD_02521 - uncharacterized protein, at 2,636,197 to 2,636,646 _02521 ECD_02522: ECD_02522 - cyaR sRNA-regulated protein, at 2,636,730 to 2,636,888 _02522 ECD_02523: ECD_02523 - tributyltin-inducible repressor of ygaVP, at 2,637,071 to 2,637,370 _02523 Position (kb) 2635 2636 2637Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2634.537 kb on + strand, within ECD_02519at 2634.538 kb on - strand, within ECD_02519at 2634.538 kb on - strand, within ECD_02519at 2634.538 kb on - strand, within ECD_02519at 2634.538 kb on - strand, within ECD_02519at 2634.540 kb on + strand, within ECD_02519at 2634.540 kb on + strand, within ECD_02519at 2634.540 kb on + strand, within ECD_02519at 2634.541 kb on - strand, within ECD_02519at 2634.611 kb on - strand, within ECD_02519at 2634.611 kb on - strand, within ECD_02519at 2634.635 kb on - strand, within ECD_02519at 2634.635 kb on - strand, within ECD_02519at 2634.650 kb on + strand, within ECD_02519at 2634.651 kb on - strand, within ECD_02519at 2634.721 kb on - strand, within ECD_02519at 2634.723 kb on + strand, within ECD_02519at 2634.723 kb on + strand, within ECD_02519at 2634.754 kb on + strand, within ECD_02519at 2634.811 kb on + strand, within ECD_02519at 2634.812 kb on - strand, within ECD_02519at 2634.812 kb on - strand, within ECD_02519at 2634.845 kb on - strand, within ECD_02519at 2634.851 kb on - strand, within ECD_02519at 2634.851 kb on - strand, within ECD_02519at 2634.851 kb on - strand, within ECD_02519at 2634.851 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.868 kb on + strand, within ECD_02519at 2634.973 kb on - strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2635.028 kb on + strand, within ECD_02519at 2635.028 kb on + strand, within ECD_02519at 2635.028 kb on + strand, within ECD_02519at 2635.028 kb on + strand, within ECD_02519at 2635.029 kb on - strand, within ECD_02519at 2635.049 kb on + strand, within ECD_02519at 2635.049 kb on + strand, within ECD_02519at 2635.050 kb on - strand, within ECD_02519at 2635.057 kb on - strand, within ECD_02519at 2635.115 kb on + strand, within ECD_02519at 2635.116 kb on - strand, within ECD_02519at 2635.129 kb on - strand, within ECD_02519at 2635.169 kb on + strand, within ECD_02519at 2635.170 kb on - strand, within ECD_02519at 2635.172 kb on + strand, within ECD_02519at 2635.172 kb on + strand, within ECD_02519at 2635.192 kb on + strand, within ECD_02519at 2635.192 kb on + strand, within ECD_02519at 2635.239 kb on + strand, within ECD_02519at 2635.239 kb on + strand, within ECD_02519at 2635.239 kb on + strand, within ECD_02519at 2635.239 kb on + strand, within ECD_02519at 2635.240 kb on - strand, within ECD_02519at 2635.341 kb on + strand, within ECD_02519at 2635.342 kb on - strand, within ECD_02519at 2635.344 kb on + strand, within ECD_02519at 2635.351 kb on + strand, within ECD_02519at 2635.351 kb on + strand, within ECD_02519at 2635.351 kb on + strand, within ECD_02519at 2635.352 kb on - strand, within ECD_02519at 2635.354 kb on + strand, within ECD_02519at 2635.354 kb on + strand, within ECD_02519at 2635.369 kb on - strand, within ECD_02519at 2635.377 kb on + strandat 2635.377 kb on + strandat 2635.377 kb on + strandat 2635.378 kb on - strandat 2635.398 kb on + strandat 2635.399 kb on - strandat 2635.399 kb on - strandat 2635.419 kb on + strandat 2635.419 kb on + strandat 2635.419 kb on + strandat 2635.422 kb on + strandat 2635.435 kb on + strandat 2635.435 kb on + strandat 2635.435 kb on + strandat 2635.435 kb on + strandat 2635.436 kb on - strandat 2635.438 kb on - strandat 2635.453 kb on + strandat 2635.453 kb on + strandat 2635.501 kb on + strandat 2635.501 kb on + strandat 2635.502 kb on - strandat 2635.504 kb on + strandat 2635.542 kb on + strandat 2635.542 kb on + strandat 2635.543 kb on - strandat 2635.578 kb on + strandat 2635.579 kb on - strandat 2635.581 kb on + strandat 2635.737 kb on + strand, within ECD_02520at 2635.737 kb on + strand, within ECD_02520at 2635.869 kb on + strand, within ECD_02520at 2635.938 kb on + strand, within ECD_02520at 2635.939 kb on - strand, within ECD_02520at 2635.969 kb on + strand, within ECD_02520at 2635.970 kb on - strand, within ECD_02520at 2635.970 kb on - strand, within ECD_02520at 2636.015 kb on - strand, within ECD_02520at 2636.022 kb on + strand, within ECD_02520at 2636.022 kb on + strand, within ECD_02520at 2636.023 kb on - strand, within ECD_02520at 2636.116 kb on - strand, within ECD_02520at 2636.151 kb on - strandat 2636.195 kb on - strandat 2636.195 kb on - strandat 2636.195 kb on - strandat 2636.195 kb on - strandat 2636.199 kb on - strandat 2636.199 kb on - strandat 2636.263 kb on - strand, within ECD_02521at 2636.280 kb on + strand, within ECD_02521at 2636.285 kb on + strand, within ECD_02521at 2636.285 kb on + strand, within ECD_02521at 2636.285 kb on + strand, within ECD_02521at 2636.285 kb on + strand, within ECD_02521at 2636.286 kb on - strand, within ECD_02521at 2636.349 kb on + strand, within ECD_02521at 2636.351 kb on + strand, within ECD_02521at 2636.352 kb on - strand, within ECD_02521at 2636.419 kb on - strand, within ECD_02521at 2636.419 kb on - strand, within ECD_02521at 2636.593 kb on - strand, within ECD_02521at 2636.593 kb on - strand, within ECD_02521at 2636.646 kb on + strandat 2636.646 kb on + strandat 2636.646 kb on + strandat 2636.646 kb on + strandat 2636.646 kb on + strandat 2636.647 kb on - strandat 2636.647 kb on - strandat 2636.647 kb on - strandat 2636.650 kb on + strandat 2636.650 kb on + strandat 2636.650 kb on + strandat 2636.650 kb on + strandat 2636.650 kb on + strandat 2636.651 kb on - strandat 2636.651 kb on - strandat 2636.651 kb on - strandat 2636.651 kb on - strandat 2636.684 kb on + strandat 2636.684 kb on + strandat 2636.684 kb on + strandat 2636.685 kb on - strandat 2636.685 kb on - strandat 2636.685 kb on - strandat 2636.732 kb on - strandat 2636.732 kb on - strandat 2636.732 kb on - strandat 2636.775 kb on - strand, within ECD_02522at 2636.776 kb on + strand, within ECD_02522at 2636.776 kb on + strand, within ECD_02522at 2636.776 kb on + strand, within ECD_02522at 2636.776 kb on + strand, within ECD_02522at 2636.776 kb on + strand, within ECD_02522at 2636.776 kb on + strand, within ECD_02522at 2636.777 kb on - strand, within ECD_02522at 2636.777 kb on - strand, within ECD_02522at 2636.777 kb on - strand, within ECD_02522at 2636.798 kb on + strand, within ECD_02522at 2636.798 kb on + strand, within ECD_02522at 2636.798 kb on + strand, within ECD_02522at 2636.799 kb on - strand, within ECD_02522at 2636.799 kb on - strand, within ECD_02522at 2636.804 kb on + strand, within ECD_02522at 2636.889 kb on - strandat 2636.893 kb on - strandat 2636.989 kb on - strandat 2636.998 kb on + strandat 2636.998 kb on + strandat 2636.999 kb on - strandat 2637.015 kb on + strandat 2637.016 kb on - strandat 2637.016 kb on - strandat 2637.017 kb on + strandat 2637.017 kb on + strandat 2637.018 kb on - strandat 2637.018 kb on - strandat 2637.018 kb on - strandat 2637.018 kb on - strandat 2637.018 kb on - strandat 2637.018 kb on - strandat 2637.018 kb on - strandat 2637.018 kb on - strandat 2637.018 kb on - strandat 2637.018 kb on - strandat 2637.018 kb on - strandat 2637.018 kb on - strandat 2637.018 kb on - strandat 2637.018 kb on - strandat 2637.090 kb on + strandat 2637.090 kb on + strandat 2637.090 kb on + strandat 2637.120 kb on + strand, within ECD_02523

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
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2,634,537 + ECD_02519 0.30 -1.9
2,634,538 - ECD_02519 0.30 -0.2
2,634,538 - ECD_02519 0.30 -0.7
2,634,538 - ECD_02519 0.30 +2.0
2,634,538 - ECD_02519 0.30 +0.1
2,634,540 + ECD_02519 0.30 +0.7
2,634,540 + ECD_02519 0.30 -1.0
2,634,540 + ECD_02519 0.30 +0.1
2,634,541 - ECD_02519 0.31 -0.8
2,634,611 - ECD_02519 0.36 +0.6
2,634,611 - ECD_02519 0.36 +0.9
2,634,635 - ECD_02519 0.37 -0.6
2,634,635 - ECD_02519 0.37 +0.3
2,634,650 + ECD_02519 0.38 +0.7
2,634,651 - ECD_02519 0.38 -1.9
2,634,721 - ECD_02519 0.43 +0.7
2,634,723 + ECD_02519 0.44 -0.9
2,634,723 + ECD_02519 0.44 -0.6
2,634,754 + ECD_02519 0.46 +0.1
2,634,811 + ECD_02519 0.50 +1.6
2,634,812 - ECD_02519 0.50 -0.1
2,634,812 - ECD_02519 0.50 +0.1
2,634,845 - ECD_02519 0.52 +0.4
2,634,851 - ECD_02519 0.53 -0.0
2,634,851 - ECD_02519 0.53 -0.6
2,634,851 - ECD_02519 0.53 -0.5
2,634,851 - ECD_02519 0.53 +0.5
2,634,858 - ECD_02519 0.53 +0.7
2,634,858 - ECD_02519 0.53 -0.0
2,634,858 - ECD_02519 0.53 +1.3
2,634,858 - ECD_02519 0.53 -0.7
2,634,858 - ECD_02519 0.53 -0.6
2,634,858 - ECD_02519 0.53 +0.5
2,634,858 - ECD_02519 0.53 -0.7
2,634,858 - ECD_02519 0.53 -1.9
2,634,868 + ECD_02519 0.54 +0.2
2,634,973 - ECD_02519 0.61 +0.6
2,634,993 + ECD_02519 0.63 +0.3
2,634,993 + ECD_02519 0.63 +0.0
2,634,993 + ECD_02519 0.63 +0.1
2,634,993 + ECD_02519 0.63 +2.1
2,634,993 + ECD_02519 0.63 -0.7
2,634,993 + ECD_02519 0.63 -0.3
2,634,993 + ECD_02519 0.63 -1.5
2,634,993 + ECD_02519 0.63 -1.0
2,634,993 + ECD_02519 0.63 -0.7
2,635,028 + ECD_02519 0.65 +0.1
2,635,028 + ECD_02519 0.65 +0.8
2,635,028 + ECD_02519 0.65 +0.5
2,635,028 + ECD_02519 0.65 -0.6
2,635,029 - ECD_02519 0.65 -0.5
2,635,049 + ECD_02519 0.67 +0.6
2,635,049 + ECD_02519 0.67 +1.8
2,635,050 - ECD_02519 0.67 -1.0
2,635,057 - ECD_02519 0.67 -0.7
2,635,115 + ECD_02519 0.72 +0.1
2,635,116 - ECD_02519 0.72 -1.0
2,635,129 - ECD_02519 0.73 +0.5
2,635,169 + ECD_02519 0.75 -0.5
2,635,170 - ECD_02519 0.75 +1.1
2,635,172 + ECD_02519 0.76 +0.2
2,635,172 + ECD_02519 0.76 -2.2
2,635,192 + ECD_02519 0.77 +0.5
2,635,192 + ECD_02519 0.77 +1.3
2,635,239 + ECD_02519 0.80 -0.7
2,635,239 + ECD_02519 0.80 +0.0
2,635,239 + ECD_02519 0.80 +0.6
2,635,239 + ECD_02519 0.80 -2.3
2,635,240 - ECD_02519 0.80 -0.1
2,635,341 + ECD_02519 0.88 +0.1
2,635,342 - ECD_02519 0.88 +0.2
2,635,344 + ECD_02519 0.88 +0.3
2,635,351 + ECD_02519 0.88 -1.5
2,635,351 + ECD_02519 0.88 +0.8
2,635,351 + ECD_02519 0.88 +0.1
2,635,352 - ECD_02519 0.88 +0.1
2,635,354 + ECD_02519 0.89 +0.4
2,635,354 + ECD_02519 0.89 -0.1
2,635,369 - ECD_02519 0.90 +2.3
2,635,377 + +0.1
2,635,377 + +0.2
2,635,377 + -1.2
2,635,378 - +0.6
2,635,398 + -0.2
2,635,399 - +0.2
2,635,399 - -0.9
2,635,419 + +0.0
2,635,419 + +1.5
2,635,419 + +0.7
2,635,422 + +0.4
2,635,435 + -0.5
2,635,435 + -1.9
2,635,435 + +0.3
2,635,435 + -0.4
2,635,436 - +0.3
2,635,438 - +0.5
2,635,453 + -0.3
2,635,453 + -0.9
2,635,501 + -0.8
2,635,501 + +0.2
2,635,502 - -1.2
2,635,504 + -0.3
2,635,542 + +0.5
2,635,542 + -2.1
2,635,543 - +0.3
2,635,578 + -0.5
2,635,579 - +0.0
2,635,581 + +0.1
2,635,737 + ECD_02520 0.31 +0.8
2,635,737 + ECD_02520 0.31 -0.3
2,635,869 + ECD_02520 0.51 -0.2
2,635,938 + ECD_02520 0.61 -0.1
2,635,939 - ECD_02520 0.61 +0.9
2,635,969 + ECD_02520 0.66 -2.8
2,635,970 - ECD_02520 0.66 -0.3
2,635,970 - ECD_02520 0.66 +0.5
2,636,015 - ECD_02520 0.73 +0.3
2,636,022 + ECD_02520 0.74 -0.7
2,636,022 + ECD_02520 0.74 +0.5
2,636,023 - ECD_02520 0.74 -0.3
2,636,116 - ECD_02520 0.88 -0.1
2,636,151 - +0.0
2,636,195 - -1.9
2,636,195 - -0.5
2,636,195 - +2.6
2,636,195 - -0.4
2,636,199 - +0.8
2,636,199 - -0.4
2,636,263 - ECD_02521 0.15 +0.0
2,636,280 + ECD_02521 0.18 +0.4
2,636,285 + ECD_02521 0.20 +0.2
2,636,285 + ECD_02521 0.20 +0.6
2,636,285 + ECD_02521 0.20 -0.1
2,636,285 + ECD_02521 0.20 +1.1
2,636,286 - ECD_02521 0.20 +0.5
2,636,349 + ECD_02521 0.34 -1.2
2,636,351 + ECD_02521 0.34 -0.5
2,636,352 - ECD_02521 0.34 +1.0
2,636,419 - ECD_02521 0.49 -0.3
2,636,419 - ECD_02521 0.49 +0.1
2,636,593 - ECD_02521 0.88 -0.2
2,636,593 - ECD_02521 0.88 -1.1
2,636,646 + -0.1
2,636,646 + +0.2
2,636,646 + -0.3
2,636,646 + -0.6
2,636,646 + -0.5
2,636,647 - -2.5
2,636,647 - -1.1
2,636,647 - +0.1
2,636,650 + +0.8
2,636,650 + -0.3
2,636,650 + -1.2
2,636,650 + +0.2
2,636,650 + +0.3
2,636,651 - +0.7
2,636,651 - +0.6
2,636,651 - -2.5
2,636,651 - +0.7
2,636,684 + -0.4
2,636,684 + -1.2
2,636,684 + +0.2
2,636,685 - +0.3
2,636,685 - +0.7
2,636,685 - +2.2
2,636,732 - +0.5
2,636,732 - -0.3
2,636,732 - +0.3
2,636,775 - ECD_02522 0.28 +0.3
2,636,776 + ECD_02522 0.29 -0.3
2,636,776 + ECD_02522 0.29 +0.2
2,636,776 + ECD_02522 0.29 -0.5
2,636,776 + ECD_02522 0.29 +1.0
2,636,776 + ECD_02522 0.29 +0.9
2,636,776 + ECD_02522 0.29 +0.8
2,636,777 - ECD_02522 0.30 +0.9
2,636,777 - ECD_02522 0.30 +0.5
2,636,777 - ECD_02522 0.30 +0.5
2,636,798 + ECD_02522 0.43 -0.1
2,636,798 + ECD_02522 0.43 +0.4
2,636,798 + ECD_02522 0.43 +1.4
2,636,799 - ECD_02522 0.43 -1.1
2,636,799 - ECD_02522 0.43 +0.4
2,636,804 + ECD_02522 0.47 -0.6
2,636,889 - -0.1
2,636,893 - +0.2
2,636,989 - +0.5
2,636,998 + +0.1
2,636,998 + -1.0
2,636,999 - +0.5
2,637,015 + +0.3
2,637,016 - +0.2
2,637,016 - -0.2
2,637,017 + +0.1
2,637,017 + +0.2
2,637,018 - +1.2
2,637,018 - +0.4
2,637,018 - +0.7
2,637,018 - +1.2
2,637,018 - +1.0
2,637,018 - +0.4
2,637,018 - -0.4
2,637,018 - -3.6
2,637,018 - +0.3
2,637,018 - -0.7
2,637,018 - +1.2
2,637,018 - +0.9
2,637,018 - +0.4
2,637,018 - -0.9
2,637,090 + +0.0
2,637,090 + -0.2
2,637,090 + -0.4
2,637,120 + ECD_02523 0.16 -0.3

Or see this region's nucleotide sequence