Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02400 and ECD_02401 are separated by 161 nucleotides ECD_02401 and ECD_02402 overlap by 4 nucleotides ECD_02402 and ECD_02403 are separated by 69 nucleotides
ECD_02400: ECD_02400 - IMP dehydrogenase, at 2,497,084 to 2,498,550
_02400
ECD_02401: ECD_02401 - exonuclease VII, large subunit, at 2,498,712 to 2,500,082
_02401
ECD_02402: ECD_02402 - DUF1407 family protein, at 2,500,079 to 2,500,294
_02402
ECD_02403: ECD_02403 - GTPase; multicopy suppressor of ftsJ, at 2,500,364 to 2,501,836
_02403
Position (kb)
2498
2499
2500
2501 Strain fitness (log2 ratio)
-2
-1
0
1 at 2497.753 kb on - strand, within ECD_02400 at 2497.753 kb on - strand, within ECD_02400 at 2497.781 kb on - strand, within ECD_02400 at 2498.096 kb on + strand, within ECD_02400 at 2498.096 kb on + strand, within ECD_02400 at 2498.097 kb on - strand, within ECD_02400 at 2498.097 kb on - strand, within ECD_02400 at 2498.097 kb on - strand, within ECD_02400 at 2498.546 kb on - strand at 2498.598 kb on + strand at 2498.716 kb on + strand at 2499.169 kb on + strand, within ECD_02401 at 2499.169 kb on + strand, within ECD_02401 at 2499.176 kb on + strand, within ECD_02401 at 2499.310 kb on + strand, within ECD_02401 at 2499.573 kb on + strand, within ECD_02401 at 2499.713 kb on + strand, within ECD_02401 at 2499.944 kb on + strand, within ECD_02401 at 2500.347 kb on - strand at 2500.356 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 2,497,753 - ECD_02400 0.46 +0.8 2,497,753 - ECD_02400 0.46 +0.2 2,497,781 - ECD_02400 0.48 -0.9 2,498,096 + ECD_02400 0.69 -1.6 2,498,096 + ECD_02400 0.69 +1.4 2,498,097 - ECD_02400 0.69 +1.5 2,498,097 - ECD_02400 0.69 +0.1 2,498,097 - ECD_02400 0.69 +0.6 2,498,546 - +0.6 2,498,598 + -0.7 2,498,716 + +0.6 2,499,169 + ECD_02401 0.33 -1.8 2,499,169 + ECD_02401 0.33 -1.4 2,499,176 + ECD_02401 0.34 -1.3 2,499,310 + ECD_02401 0.44 -1.3 2,499,573 + ECD_02401 0.63 +0.4 2,499,713 + ECD_02401 0.73 -0.6 2,499,944 + ECD_02401 0.90 -0.8 2,500,347 - -0.4 2,500,356 - -0.0
Or see this region's nucleotide sequence