Strain Fitness in Escherichia coli BL21 around ECD_02155

Experiment: Bas50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02154 and ECD_02155 overlap by 67 nucleotidesECD_02155 and ECD_02156 overlap by 4 nucleotides ECD_02154: ECD_02154 - putative membrane protein, at 2,220,159 to 2,224,763 _02154 ECD_02155: ECD_02155 - DUF1175 family protein, putative host defense protein, at 2,224,697 to 2,225,320 _02155 ECD_02156: ECD_02156 - DUF2138 family protein, putative host defense protein, at 2,225,317 to 2,227,005 _02156 Position (kb) 2224 2225 2226Strain fitness (log2 ratio) -2 -1 0 1 2at 2223.742 kb on + strand, within ECD_02154at 2223.829 kb on - strand, within ECD_02154at 2223.831 kb on - strand, within ECD_02154at 2223.831 kb on - strand, within ECD_02154at 2224.083 kb on - strand, within ECD_02154at 2224.084 kb on + strand, within ECD_02154at 2224.084 kb on + strand, within ECD_02154at 2224.084 kb on + strand, within ECD_02154at 2224.084 kb on + strand, within ECD_02154at 2224.085 kb on - strand, within ECD_02154at 2224.085 kb on - strand, within ECD_02154at 2224.236 kb on + strand, within ECD_02154at 2224.236 kb on + strand, within ECD_02154at 2224.253 kb on + strand, within ECD_02154at 2224.275 kb on + strand, within ECD_02154at 2224.382 kb on + strandat 2224.472 kb on + strandat 2224.845 kb on + strand, within ECD_02155at 2224.931 kb on + strand, within ECD_02155at 2224.960 kb on - strand, within ECD_02155at 2225.216 kb on + strand, within ECD_02155at 2225.432 kb on - strandat 2225.432 kb on - strandat 2225.529 kb on + strand, within ECD_02156at 2225.531 kb on + strand, within ECD_02156at 2225.532 kb on - strand, within ECD_02156at 2225.532 kb on - strand, within ECD_02156at 2225.928 kb on - strand, within ECD_02156at 2226.061 kb on - strand, within ECD_02156at 2226.097 kb on + strand, within ECD_02156at 2226.098 kb on - strand, within ECD_02156

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
remove
2,223,742 + ECD_02154 0.78 -0.2
2,223,829 - ECD_02154 0.80 +2.2
2,223,831 - ECD_02154 0.80 +0.9
2,223,831 - ECD_02154 0.80 +0.2
2,224,083 - ECD_02154 0.85 +0.1
2,224,084 + ECD_02154 0.85 +0.1
2,224,084 + ECD_02154 0.85 -0.6
2,224,084 + ECD_02154 0.85 -0.3
2,224,084 + ECD_02154 0.85 +0.3
2,224,085 - ECD_02154 0.85 +1.1
2,224,085 - ECD_02154 0.85 +0.4
2,224,236 + ECD_02154 0.89 -0.8
2,224,236 + ECD_02154 0.89 +0.5
2,224,253 + ECD_02154 0.89 -0.4
2,224,275 + ECD_02154 0.89 -0.6
2,224,382 + -1.9
2,224,472 + -0.2
2,224,845 + ECD_02155 0.24 -0.7
2,224,931 + ECD_02155 0.38 -0.1
2,224,960 - ECD_02155 0.42 -0.4
2,225,216 + ECD_02155 0.83 +0.0
2,225,432 - +2.7
2,225,432 - +0.4
2,225,529 + ECD_02156 0.13 -1.3
2,225,531 + ECD_02156 0.13 +0.2
2,225,532 - ECD_02156 0.13 -0.2
2,225,532 - ECD_02156 0.13 +1.0
2,225,928 - ECD_02156 0.36 +1.3
2,226,061 - ECD_02156 0.44 +0.4
2,226,097 + ECD_02156 0.46 -0.7
2,226,098 - ECD_02156 0.46 +1.3

Or see this region's nucleotide sequence