Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02133 and ECD_02134 overlap by 4 nucleotides ECD_02134 and ECD_02135 overlap by 11 nucleotides ECD_02135 and ECD_04337 are separated by 108 nucleotides ECD_04337 and ECD_02136 are separated by 134 nucleotides
ECD_02133: ECD_02133 - nitrate reductase, periplasmic, large subunit, at 2,193,917 to 2,196,403
_02133
ECD_02134: ECD_02134 - assembly protein for periplasmic nitrate reductase, at 2,196,400 to 2,196,663
_02134
ECD_02135: ECD_02135 - ferredoxin-type protein, role in electron transfer to periplasmic nitrate reductase NapA, at 2,196,653 to 2,197,147
_02135
ECD_04337: ECD_04337 - hypothetical protein, at 2,197,256 to 2,197,420
_04337
ECD_02136: ECD_02136 - ecotin, a serine protease inhibitor, at 2,197,555 to 2,198,043
_02136
Position (kb)
2196
2197 Strain fitness (log2 ratio)
-2
-1
0
1 at 2195.583 kb on + strand, within ECD_02133 at 2195.584 kb on - strand, within ECD_02133 at 2195.659 kb on + strand, within ECD_02133 at 2195.675 kb on - strand, within ECD_02133 at 2195.828 kb on - strand, within ECD_02133 at 2195.836 kb on + strand, within ECD_02133 at 2196.082 kb on + strand, within ECD_02133 at 2196.129 kb on + strand, within ECD_02133 at 2196.370 kb on + strand at 2196.654 kb on + strand at 2196.669 kb on + strand at 2196.670 kb on - strand at 2196.681 kb on - strand at 2196.739 kb on + strand, within ECD_02135 at 2196.740 kb on - strand, within ECD_02135 at 2196.781 kb on + strand, within ECD_02135 at 2196.803 kb on - strand, within ECD_02135 at 2197.494 kb on + strand at 2197.494 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 2,195,583 + ECD_02133 0.67 -0.3 2,195,584 - ECD_02133 0.67 +0.7 2,195,659 + ECD_02133 0.70 +0.0 2,195,675 - ECD_02133 0.71 +0.6 2,195,828 - ECD_02133 0.77 +0.1 2,195,836 + ECD_02133 0.77 -1.1 2,196,082 + ECD_02133 0.87 -1.1 2,196,129 + ECD_02133 0.89 -2.0 2,196,370 + +0.8 2,196,654 + +0.5 2,196,669 + -0.3 2,196,670 - -0.9 2,196,681 - +0.4 2,196,739 + ECD_02135 0.17 +0.2 2,196,740 - ECD_02135 0.18 -0.2 2,196,781 + ECD_02135 0.26 -1.2 2,196,803 - ECD_02135 0.30 -0.2 2,197,494 + -1.4 2,197,494 + -0.6
Or see this region's nucleotide sequence