Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02116 and ECD_02117 are separated by 181 nucleotides ECD_02117 and ECD_02118 are separated by 19 nucleotides ECD_02118 and ECD_t00037 are separated by 74 nucleotides ECD_t00037 and ECD_02119 are separated by 102 nucleotides
ECD_02116: ECD_02116 - spermidine nucleoid-associated protein, at 2,177,789 to 2,178,796
_02116
ECD_02117: ECD_02117 - UPF0352 family protein, at 2,178,978 to 2,179,205
_02117
ECD_02118: ECD_02118 - essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor, at 2,179,225 to 2,180,985
_02118
ECD_t00037: ECD_t00037 - tRNA-Pro, at 2,181,060 to 2,181,136
_t00037
ECD_02119: ECD_02119 - putative autotransporter outer membrane protein, at 2,181,239 to 2,183,749
_02119
Position (kb)
2179
2180
2181 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2178.591 kb on - strand, within ECD_02116 at 2178.758 kb on - strand at 2178.800 kb on - strand at 2178.811 kb on + strand at 2178.812 kb on - strand at 2178.855 kb on - strand at 2178.942 kb on + strand at 2178.977 kb on + strand at 2179.923 kb on + strand, within ECD_02118 at 2180.039 kb on - strand, within ECD_02118 at 2180.109 kb on + strand, within ECD_02118 at 2180.127 kb on + strand, within ECD_02118 at 2180.213 kb on + strand, within ECD_02118 at 2180.217 kb on + strand, within ECD_02118 at 2180.271 kb on + strand, within ECD_02118 at 2180.550 kb on + strand, within ECD_02118 at 2180.562 kb on + strand, within ECD_02118 at 2180.676 kb on + strand, within ECD_02118 at 2180.679 kb on + strand, within ECD_02118 at 2180.732 kb on + strand, within ECD_02118 at 2180.838 kb on + strand at 2180.877 kb on + strand at 2180.897 kb on + strand at 2180.933 kb on + strand at 2181.046 kb on + strand at 2181.046 kb on + strand at 2181.177 kb on + strand at 2181.505 kb on - strand, within ECD_02119 at 2181.505 kb on - strand, within ECD_02119 at 2181.602 kb on - strand, within ECD_02119 at 2181.780 kb on + strand, within ECD_02119 at 2181.781 kb on - strand, within ECD_02119 at 2181.781 kb on - strand, within ECD_02119 at 2181.781 kb on - strand, within ECD_02119 at 2181.825 kb on + strand, within ECD_02119 at 2181.826 kb on - strand, within ECD_02119 at 2181.826 kb on - strand, within ECD_02119 at 2181.826 kb on - strand, within ECD_02119 at 2181.826 kb on - strand, within ECD_02119 at 2181.826 kb on - strand, within ECD_02119 at 2181.826 kb on - strand, within ECD_02119
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 2,178,591 - ECD_02116 0.80 -0.3 2,178,758 - +0.6 2,178,800 - +0.5 2,178,811 + -0.8 2,178,812 - -0.5 2,178,855 - -0.3 2,178,942 + -0.4 2,178,977 + -0.3 2,179,923 + ECD_02118 0.40 +0.7 2,180,039 - ECD_02118 0.46 +0.2 2,180,109 + ECD_02118 0.50 +0.2 2,180,127 + ECD_02118 0.51 -1.2 2,180,213 + ECD_02118 0.56 -2.3 2,180,217 + ECD_02118 0.56 +0.1 2,180,271 + ECD_02118 0.59 -1.3 2,180,550 + ECD_02118 0.75 -0.2 2,180,562 + ECD_02118 0.76 -1.1 2,180,676 + ECD_02118 0.82 -1.9 2,180,679 + ECD_02118 0.83 -0.0 2,180,732 + ECD_02118 0.86 -0.1 2,180,838 + -1.1 2,180,877 + -1.3 2,180,897 + -1.1 2,180,933 + +0.7 2,181,046 + -0.2 2,181,046 + -1.0 2,181,177 + -0.5 2,181,505 - ECD_02119 0.11 -1.1 2,181,505 - ECD_02119 0.11 -1.0 2,181,602 - ECD_02119 0.14 +0.6 2,181,780 + ECD_02119 0.22 -0.2 2,181,781 - ECD_02119 0.22 -2.1 2,181,781 - ECD_02119 0.22 +0.0 2,181,781 - ECD_02119 0.22 +0.9 2,181,825 + ECD_02119 0.23 +0.5 2,181,826 - ECD_02119 0.23 -0.3 2,181,826 - ECD_02119 0.23 -2.9 2,181,826 - ECD_02119 0.23 -3.0 2,181,826 - ECD_02119 0.23 -0.3 2,181,826 - ECD_02119 0.23 -0.3 2,181,826 - ECD_02119 0.23 -0.6
Or see this region's nucleotide sequence