Strain Fitness in Escherichia coli BL21 around ECD_02118

Experiment: Bas50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02116 and ECD_02117 are separated by 181 nucleotidesECD_02117 and ECD_02118 are separated by 19 nucleotidesECD_02118 and ECD_t00037 are separated by 74 nucleotidesECD_t00037 and ECD_02119 are separated by 102 nucleotides ECD_02116: ECD_02116 - spermidine nucleoid-associated protein, at 2,177,789 to 2,178,796 _02116 ECD_02117: ECD_02117 - UPF0352 family protein, at 2,178,978 to 2,179,205 _02117 ECD_02118: ECD_02118 - essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor, at 2,179,225 to 2,180,985 _02118 ECD_t00037: ECD_t00037 - tRNA-Pro, at 2,181,060 to 2,181,136 _t00037 ECD_02119: ECD_02119 - putative autotransporter outer membrane protein, at 2,181,239 to 2,183,749 _02119 Position (kb) 2179 2180 2181Strain fitness (log2 ratio) -3 -2 -1 0 1at 2178.591 kb on - strand, within ECD_02116at 2178.758 kb on - strandat 2178.800 kb on - strandat 2178.811 kb on + strandat 2178.812 kb on - strandat 2178.855 kb on - strandat 2178.942 kb on + strandat 2178.977 kb on + strandat 2179.923 kb on + strand, within ECD_02118at 2180.039 kb on - strand, within ECD_02118at 2180.109 kb on + strand, within ECD_02118at 2180.127 kb on + strand, within ECD_02118at 2180.213 kb on + strand, within ECD_02118at 2180.217 kb on + strand, within ECD_02118at 2180.271 kb on + strand, within ECD_02118at 2180.550 kb on + strand, within ECD_02118at 2180.562 kb on + strand, within ECD_02118at 2180.676 kb on + strand, within ECD_02118at 2180.679 kb on + strand, within ECD_02118at 2180.732 kb on + strand, within ECD_02118at 2180.838 kb on + strandat 2180.877 kb on + strandat 2180.897 kb on + strandat 2180.933 kb on + strandat 2181.046 kb on + strandat 2181.046 kb on + strandat 2181.177 kb on + strandat 2181.505 kb on - strand, within ECD_02119at 2181.505 kb on - strand, within ECD_02119at 2181.602 kb on - strand, within ECD_02119at 2181.780 kb on + strand, within ECD_02119at 2181.781 kb on - strand, within ECD_02119at 2181.781 kb on - strand, within ECD_02119at 2181.781 kb on - strand, within ECD_02119at 2181.825 kb on + strand, within ECD_02119at 2181.826 kb on - strand, within ECD_02119at 2181.826 kb on - strand, within ECD_02119at 2181.826 kb on - strand, within ECD_02119at 2181.826 kb on - strand, within ECD_02119at 2181.826 kb on - strand, within ECD_02119at 2181.826 kb on - strand, within ECD_02119

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas50
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2,178,591 - ECD_02116 0.80 -0.3
2,178,758 - +0.6
2,178,800 - +0.5
2,178,811 + -0.8
2,178,812 - -0.5
2,178,855 - -0.3
2,178,942 + -0.4
2,178,977 + -0.3
2,179,923 + ECD_02118 0.40 +0.7
2,180,039 - ECD_02118 0.46 +0.2
2,180,109 + ECD_02118 0.50 +0.2
2,180,127 + ECD_02118 0.51 -1.2
2,180,213 + ECD_02118 0.56 -2.3
2,180,217 + ECD_02118 0.56 +0.1
2,180,271 + ECD_02118 0.59 -1.3
2,180,550 + ECD_02118 0.75 -0.2
2,180,562 + ECD_02118 0.76 -1.1
2,180,676 + ECD_02118 0.82 -1.9
2,180,679 + ECD_02118 0.83 -0.0
2,180,732 + ECD_02118 0.86 -0.1
2,180,838 + -1.1
2,180,877 + -1.3
2,180,897 + -1.1
2,180,933 + +0.7
2,181,046 + -0.2
2,181,046 + -1.0
2,181,177 + -0.5
2,181,505 - ECD_02119 0.11 -1.1
2,181,505 - ECD_02119 0.11 -1.0
2,181,602 - ECD_02119 0.14 +0.6
2,181,780 + ECD_02119 0.22 -0.2
2,181,781 - ECD_02119 0.22 -2.1
2,181,781 - ECD_02119 0.22 +0.0
2,181,781 - ECD_02119 0.22 +0.9
2,181,825 + ECD_02119 0.23 +0.5
2,181,826 - ECD_02119 0.23 -0.3
2,181,826 - ECD_02119 0.23 -2.9
2,181,826 - ECD_02119 0.23 -3.0
2,181,826 - ECD_02119 0.23 -0.3
2,181,826 - ECD_02119 0.23 -0.3
2,181,826 - ECD_02119 0.23 -0.6

Or see this region's nucleotide sequence