Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02026 and ECD_02027 overlap by 4 nucleotides ECD_02027 and ECD_02028 overlap by 4 nucleotides ECD_02028 and ECD_02029 overlap by 27 nucleotides
ECD_02026: ECD_02026 - nucleoside transporter, low affinity, at 2,076,616 to 2,077,893
_02026
ECD_02027: ECD_02027 - ADP-ribosylglycohydrolase family protein, at 2,077,890 to 2,078,894
_02027
ECD_02028: ECD_02028 - putative kinase, at 2,078,891 to 2,079,856
_02028
ECD_02029: ECD_02029 - putative DNA-binding transcriptional regulator, at 2,079,830 to 2,080,576
_02029
Position (kb)
2077
2078
2079 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2076.928 kb on + strand, within ECD_02026 at 2076.928 kb on + strand, within ECD_02026 at 2076.931 kb on - strand, within ECD_02026 at 2077.297 kb on + strand, within ECD_02026 at 2077.301 kb on - strand, within ECD_02026 at 2077.504 kb on + strand, within ECD_02026 at 2077.514 kb on - strand, within ECD_02026 at 2077.550 kb on + strand, within ECD_02026 at 2077.579 kb on + strand, within ECD_02026 at 2077.579 kb on + strand, within ECD_02026 at 2077.585 kb on + strand, within ECD_02026 at 2077.617 kb on + strand, within ECD_02026 at 2077.887 kb on + strand at 2077.887 kb on + strand at 2078.052 kb on - strand, within ECD_02027 at 2078.410 kb on + strand, within ECD_02027 at 2078.637 kb on - strand, within ECD_02027 at 2078.847 kb on + strand at 2078.869 kb on - strand at 2078.929 kb on - strand at 2079.171 kb on + strand, within ECD_02028 at 2079.430 kb on + strand, within ECD_02028 at 2079.623 kb on + strand, within ECD_02028 at 2079.714 kb on + strand, within ECD_02028 at 2079.832 kb on - strand at 2079.832 kb on - strand at 2079.854 kb on + strand at 2079.889 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 2,076,928 + ECD_02026 0.24 -0.4 2,076,928 + ECD_02026 0.24 -0.4 2,076,931 - ECD_02026 0.25 +0.2 2,077,297 + ECD_02026 0.53 -1.3 2,077,301 - ECD_02026 0.54 +0.2 2,077,504 + ECD_02026 0.69 +0.9 2,077,514 - ECD_02026 0.70 -0.0 2,077,550 + ECD_02026 0.73 +0.8 2,077,579 + ECD_02026 0.75 +0.6 2,077,579 + ECD_02026 0.75 -0.2 2,077,585 + ECD_02026 0.76 +0.1 2,077,617 + ECD_02026 0.78 +0.0 2,077,887 + -1.9 2,077,887 + +0.8 2,078,052 - ECD_02027 0.16 -1.0 2,078,410 + ECD_02027 0.52 -2.7 2,078,637 - ECD_02027 0.74 -0.2 2,078,847 + +0.4 2,078,869 - +0.2 2,078,929 - -0.4 2,079,171 + ECD_02028 0.29 -0.0 2,079,430 + ECD_02028 0.56 +0.8 2,079,623 + ECD_02028 0.76 +0.1 2,079,714 + ECD_02028 0.85 -0.7 2,079,832 - -0.2 2,079,832 - -0.5 2,079,854 + -2.9 2,079,889 + -0.9
Or see this region's nucleotide sequence