Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01968 and ECD_01969 are separated by 658 nucleotides ECD_01969 and ECD_01970 are separated by 273 nucleotides
ECD_01968: ECD_01968 - colanic acid export protein; outer membrane auxillary lipoprotein, at 2,035,111 to 2,036,250
_01968
ECD_01969: ECD_01969 - inner membrane protein, at 2,036,909 to 2,038,492
_01969
ECD_01970: ECD_01970 - suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane-anchored periplasmic protein, at 2,038,766 to 2,040,619
_01970
Position (kb)
2036
2037
2038
2039 Strain fitness (log2 ratio)
-2
-1
0
1 at 2035.972 kb on - strand, within ECD_01968 at 2036.063 kb on - strand, within ECD_01968 at 2036.905 kb on + strand at 2036.905 kb on + strand at 2036.905 kb on + strand at 2036.905 kb on + strand at 2036.908 kb on + strand at 2037.171 kb on + strand, within ECD_01969 at 2037.253 kb on + strand, within ECD_01969 at 2037.551 kb on + strand, within ECD_01969 at 2037.551 kb on + strand, within ECD_01969 at 2037.679 kb on + strand, within ECD_01969 at 2038.680 kb on - strand at 2038.680 kb on - strand at 2038.768 kb on - strand at 2038.768 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 2,035,972 - ECD_01968 0.76 +1.2 2,036,063 - ECD_01968 0.84 -0.6 2,036,905 + +0.3 2,036,905 + +0.4 2,036,905 + -2.0 2,036,905 + +0.4 2,036,908 + +0.5 2,037,171 + ECD_01969 0.17 -0.0 2,037,253 + ECD_01969 0.22 +0.8 2,037,551 + ECD_01969 0.41 -0.3 2,037,551 + ECD_01969 0.41 -1.1 2,037,679 + ECD_01969 0.49 -2.0 2,038,680 - -0.2 2,038,680 - +0.7 2,038,768 - +0.4 2,038,768 - +0.9
Or see this region's nucleotide sequence