Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01825 and ECD_01826 are separated by 130 nucleotides ECD_01826 and ECD_01827 are separated by 119 nucleotides
ECD_01825: ECD_01825 - pyruvate kinase II, at 1,883,373 to 1,884,815
_01825
ECD_01826: ECD_01826 - myristoyl-acyl carrier protein (ACP)-dependent acyltransferase, at 1,884,946 to 1,885,917
_01826
ECD_01827: ECD_01827 - murein DD-endopeptidase, space-maker hydrolase, septation protein, at 1,886,037 to 1,887,359
_01827
Position (kb)
1884
1885
1886 Strain fitness (log2 ratio)
-2
-1
0
1 at 1883.988 kb on + strand, within ECD_01825 at 1884.245 kb on + strand, within ECD_01825 at 1884.245 kb on + strand, within ECD_01825 at 1884.483 kb on + strand, within ECD_01825 at 1884.782 kb on + strand at 1884.789 kb on - strand at 1885.184 kb on - strand, within ECD_01826 at 1885.241 kb on + strand, within ECD_01826 at 1885.301 kb on + strand, within ECD_01826 at 1885.302 kb on - strand, within ECD_01826 at 1885.406 kb on + strand, within ECD_01826 at 1885.407 kb on - strand, within ECD_01826 at 1885.964 kb on - strand at 1886.035 kb on - strand at 1886.161 kb on - strand at 1886.167 kb on - strand at 1886.167 kb on - strand at 1886.167 kb on - strand at 1886.280 kb on - strand, within ECD_01827 at 1886.281 kb on + strand, within ECD_01827 at 1886.294 kb on - strand, within ECD_01827 at 1886.321 kb on - strand, within ECD_01827 at 1886.321 kb on - strand, within ECD_01827 at 1886.478 kb on - strand, within ECD_01827 at 1886.573 kb on - strand, within ECD_01827 at 1886.656 kb on - strand, within ECD_01827 at 1886.862 kb on - strand, within ECD_01827 at 1886.869 kb on + strand, within ECD_01827
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 1,883,988 + ECD_01825 0.43 -1.2 1,884,245 + ECD_01825 0.60 +1.1 1,884,245 + ECD_01825 0.60 +0.8 1,884,483 + ECD_01825 0.77 +1.1 1,884,782 + -0.7 1,884,789 - +1.1 1,885,184 - ECD_01826 0.24 +0.1 1,885,241 + ECD_01826 0.30 -0.4 1,885,301 + ECD_01826 0.37 +0.1 1,885,302 - ECD_01826 0.37 -1.2 1,885,406 + ECD_01826 0.47 -1.3 1,885,407 - ECD_01826 0.47 -0.9 1,885,964 - +0.0 1,886,035 - -0.0 1,886,161 - +0.1 1,886,167 - -0.1 1,886,167 - -0.4 1,886,167 - -0.7 1,886,280 - ECD_01827 0.18 -0.1 1,886,281 + ECD_01827 0.18 +0.4 1,886,294 - ECD_01827 0.19 -1.9 1,886,321 - ECD_01827 0.21 +0.3 1,886,321 - ECD_01827 0.21 -1.7 1,886,478 - ECD_01827 0.33 -1.7 1,886,573 - ECD_01827 0.41 -0.1 1,886,656 - ECD_01827 0.47 -0.7 1,886,862 - ECD_01827 0.62 -1.3 1,886,869 + ECD_01827 0.63 -2.2
Or see this region's nucleotide sequence