Experiment: Bas50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01050 and ECD_01051 are separated by 224 nucleotides ECD_01051 and ECD_01052 are separated by 41 nucleotides ECD_01052 and ECD_01053 are separated by 3 nucleotides
ECD_01050: ECD_01050 - lauryl-acyl carrier protein (ACP)-dependent acyltransferase, at 1,118,229 to 1,119,149
_01050
ECD_01051: ECD_01051 - putative rhodanese-related sulfurtransferase, at 1,119,374 to 1,120,426
_01051
ECD_01052: ECD_01052 - periplasmic high pH-inducible lipid-binding protein, at 1,120,468 to 1,121,043
_01052
ECD_01053: ECD_01053 - putative cytochrome b561, at 1,121,047 to 1,121,613
_01053
Position (kb)
1119
1120
1121 Strain fitness (log2 ratio)
-2
-1
0
1 at 1119.171 kb on - strand at 1119.171 kb on - strand at 1119.184 kb on + strand at 1119.185 kb on - strand at 1119.185 kb on - strand at 1119.185 kb on - strand at 1119.189 kb on - strand at 1119.189 kb on - strand at 1119.368 kb on + strand at 1119.467 kb on + strand at 1119.548 kb on + strand, within ECD_01051 at 1119.651 kb on + strand, within ECD_01051 at 1119.661 kb on + strand, within ECD_01051 at 1119.829 kb on + strand, within ECD_01051 at 1119.829 kb on + strand, within ECD_01051 at 1119.829 kb on + strand, within ECD_01051 at 1119.848 kb on + strand, within ECD_01051 at 1119.898 kb on + strand, within ECD_01051 at 1119.946 kb on + strand, within ECD_01051 at 1119.968 kb on + strand, within ECD_01051 at 1120.105 kb on + strand, within ECD_01051 at 1120.147 kb on + strand, within ECD_01051 at 1120.372 kb on + strand at 1120.372 kb on + strand at 1120.424 kb on + strand at 1121.156 kb on - strand, within ECD_01053 at 1121.322 kb on - strand, within ECD_01053 at 1121.399 kb on - strand, within ECD_01053
Per-strain Table
Position Strand Gene LocusTag Fraction Bas50 remove 1,119,171 - -1.1 1,119,171 - -1.2 1,119,184 + -0.8 1,119,185 - +0.8 1,119,185 - +0.1 1,119,185 - +0.4 1,119,189 - +0.4 1,119,189 - -2.3 1,119,368 + -1.1 1,119,467 + +0.0 1,119,548 + ECD_01051 0.17 -0.0 1,119,651 + ECD_01051 0.26 +0.3 1,119,661 + ECD_01051 0.27 +0.6 1,119,829 + ECD_01051 0.43 +1.3 1,119,829 + ECD_01051 0.43 +0.1 1,119,829 + ECD_01051 0.43 +0.3 1,119,848 + ECD_01051 0.45 +0.8 1,119,898 + ECD_01051 0.50 -1.0 1,119,946 + ECD_01051 0.54 -1.0 1,119,968 + ECD_01051 0.56 -0.1 1,120,105 + ECD_01051 0.69 +1.3 1,120,147 + ECD_01051 0.73 +0.3 1,120,372 + -0.1 1,120,372 + +1.6 1,120,424 + +0.2 1,121,156 - ECD_01053 0.19 -0.2 1,121,322 - ECD_01053 0.49 -1.2 1,121,399 - ECD_01053 0.62 -0.8
Or see this region's nucleotide sequence